CuGenDBv2

Gene ID	PI0019809
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	60S ribosomal export protein NMD3
Genome location	chr05:20899366..20900870
RNA-Seq Expression	PI0019809
Synteny	PI0019809
Gene Ontology terms	GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR007064 - Nmd3, N-terminal IPR039768 - Ribosomal export protein Nmd3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036240.1 60S ribosomal export protein NMD3 [Cucumis melo var. makuwa]

1.7e-97

51.53

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MA E GLF +QQTIG VL CKCGIP+ PNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGAILEQSY+VEYV+QDHLCESCSR+QANPDQ V  VQLRQHV HRRTFFF+EQ ILKH AAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY
        F +RS+GVKFVEF+GKVA I SRHDK                                              L+I       I+ L  F           
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSFRSLLTSRQLVEY VL + E+VST+VN + SKY LA  Q                      ILNPGDYALGYD YGANSNDMEL++Y+ L+LPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP
        ILIKKSY EK Q+K GKPRSWKLKSL MDVD+  K  VD     +  +Q    L++ P
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP

KAG6586102.1 60S ribosomal export protein NMD3, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-97

53.47

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MAGE GLF +QQTIG VL CKCGIP+APNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGAILEQSY+VEYV+QDHLCESCSRVQANPDQ V  VQLRQHV HRRTFFF+EQ ILKHSAAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY
        F +RS+GVKFVEFIGKVA I SR DK                                              L+I      +++ L        F   + 
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSF+ LLTSRQLVEY VL + E+VST+VN S SKY LA+ Q                      ILNPGDYALGYD Y ANSNDMEL++Y+ LQLPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE
        ILIKKSY EK Q+K GKPRSWKLKSL+M+VD+
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE

XP_008440695.1 PREDICTED: 60S ribosomal export protein NMD3 [Cucumis melo]

1.7e-97

51.53

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MA E GLF +QQTIG VL CKCGIP+ PNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGAILEQSY+VEYV+QDHLCESCSR+QANPDQ V  VQLRQHV HRRTFFF+EQ ILKH AAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY
        F +RS+GVKFVEF+GKVA I SRHDK                                              L+I       I+ L  F           
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSFRSLLTSRQLVEY VL + E+VST+VN + SKY LA  Q                      ILNPGDYALGYD YGANSNDMEL++Y+ L+LPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP
        ILIKKSY EK Q+K GKPRSWKLKSL MDVD+  K  VD     +  +Q    L++ P
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP

XP_022938070.1 60S ribosomal export protein NMD3-like [Cucurbita moschata]

1.3e-97

53.47

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MAGE GLF +QQTIG VL CKCGIP+APNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGA+LEQSY+VEYV+QDHLCESCSRVQANPDQ V  VQLRQHV HRRTFFF+EQ ILKHSAAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY
        F +RS+GVKFVEFIGKVA I SR DK                                              L+I      +++ L        F   + 
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSF+ LLTSRQLVEY VL + E+VST+VN S SKY LA+ Q                      ILNPGDYALGYD Y ANSNDMEL++Y+ LQLPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE
        ILIKKSY EK Q+K GKPRSWKLKSL+MDVD+
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE

XP_022965515.1 60S ribosomal export protein NMD3-like [Cucurbita maxima]

5.9e-98

53.94

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MAGE GLF +QQTIG VL CKCGIP+APNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGAILEQSY+VEYV+QDHLCESCSRVQANPDQ V  VQLRQHV HRRTFFF+EQ ILKHSAAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY
        F +RS+GVKFVEFIGKVA I SR DK                                              L+I      ++S L        F   + 
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSF+ LLTSRQLVEY VL + E+VST+VN S SKY LA+ Q                      ILNPGDYALGYD Y ANSNDMEL++Y+ LQLPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE
        ILIKKSY EK Q+K GKPRSWKLKSL MDVD+
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B197 60S ribosomal export protein NMD3

8.3e-98

51.53

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MA E GLF +QQTIG VL CKCGIP+ PNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGAILEQSY+VEYV+QDHLCESCSR+QANPDQ V  VQLRQHV HRRTFFF+EQ ILKH AAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY
        F +RS+GVKFVEF+GKVA I SRHDK                                              L+I       I+ L  F           
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSFRSLLTSRQLVEY VL + E+VST+VN + SKY LA  Q                      ILNPGDYALGYD YGANSNDMEL++Y+ L+LPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP
        ILIKKSY EK Q+K GKPRSWKLKSL MDVD+  K  VD     +  +Q    L++ P
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP

A0A5A7SYS9 60S ribosomal export protein NMD3

8.3e-98

51.53

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MA E GLF +QQTIG VL CKCGIP+ PNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGAILEQSY+VEYV+QDHLCESCSR+QANPDQ V  VQLRQHV HRRTFFF+EQ ILKH AAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY
        F +RS+GVKFVEF+GKVA I SRHDK                                              L+I       I+ L  F           
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSFRSLLTSRQLVEY VL + E+VST+VN + SKY LA  Q                      ILNPGDYALGYD YGANSNDMEL++Y+ L+LPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP
        ILIKKSY EK Q+K GKPRSWKLKSL MDVD+  K  VD     +  +Q    L++ P
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP

A0A5D3CM67 60S ribosomal export protein NMD3

8.3e-98

51.53

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MA E GLF +QQTIG VL CKCGIP+ PNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGAILEQSY+VEYV+QDHLCESCSR+QANPDQ V  VQLRQHV HRRTFFF+EQ ILKH AAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY
        F +RS+GVKFVEF+GKVA I SRHDK                                              L+I       I+ L  F           
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLSLFKY------PQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSFRSLLTSRQLVEY VL + E+VST+VN + SKY LA  Q                      ILNPGDYALGYD YGANSNDMEL++Y+ L+LPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP
        ILIKKSY EK Q+K GKPRSWKLKSL MDVD+  K  VD     +  +Q    L++ P
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLTLKQQNYMPLKKTP

A0A6J1FIM4 60S ribosomal export protein NMD3

6.3e-98

53.47

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MAGE GLF +QQTIG VL CKCGIP+APNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGA+LEQSY+VEYV+QDHLCESCSRVQANPDQ V  VQLRQHV HRRTFFF+EQ ILKHSAAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY
        F +RS+GVKFVEFIGKVA I SR DK                                              L+I      +++ L        F   + 
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSF+ LLTSRQLVEY VL + E+VST+VN S SKY LA+ Q                      ILNPGDYALGYD Y ANSNDMEL++Y+ LQLPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE
        ILIKKSY EK Q+K GKPRSWKLKSL+MDVD+
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE

A0A6J1HNX8 60S ribosomal export protein NMD3

2.8e-98

53.94

Show/hide

Query:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------
        MAGE GLF +QQTIG VL CKCGIP+APNAAN+CVKCLCSEVDITE LQKQ TI                              IKR+ N          
Subjt:  MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIIN----------

Query:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF
              + KRI+VKLKVQK V HGAILEQSY+VEYV+QDHLCESCSRVQANPDQ V  VQLRQHV HRRTFFF+EQ ILKHSAAA A RI+QM  G+ FF
Subjt:  ----TLYQKRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFF

Query:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY
        F +RS+GVKFVEFIGKVA I SR DK                                              L+I      ++S L        F   + 
Subjt:  FCDRSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQY

Query:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA
        YWRTSF+ LLTSRQLVEY VL + E+VST+VN S SKY LA+ Q                      ILNPGDYALGYD Y ANSNDMEL++Y+ LQLPEA
Subjt:  YWRTSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ---------------------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEA

Query:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE
        ILIKKSY EK Q+K GKPRSWKLKSL MDVD+
Subjt:  ILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDE

SwissProt top hits

e value

%identity

Alignment

Q55BF2 60S ribosomal export protein NMD3

4.0e-33

Show/hide

Query:  VLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRI--INTL------------YQKRIEVKLK
        +L C CG+ I  N +N+CV C+ S+VDITE + KQ TI+                             IKRI  +N +            + KR++VKL 
Subjt:  VLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRI--INTL------------YQKRIEVKLK

Query:  VQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGVKFVEFIGK
        +QK V   AIL+Q +I+E+++Q   C+ C + +A  D     VQLRQ V H+RTF ++EQ ILKH+A ++   I++   G+ FFF +R++ +KFVEFI  
Subjt:  VQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGVKFVEFIGK

Query:  VARIESRHDKLFL----------------------------------------MILRVTFTTISTLSLFKYPQ----------YYWRTSFRSLLTSRQLV
        +  ++++  +  +                                        M   V  T +S L  F  P            +W + FR+L + +QLV
Subjt:  VARIESRHDKLFL----------------------------------------MILRVTFTTISTLSLFKYPQ----------YYWRTSFRSLLTSRQLV

Query:  EYTVL-----------YNKEDV----STDVNASVSKYTL-ANTQDILNPGDYALGYDPYGANSNDMELKEY-ESLQLPEAILIKKSYGEKCQKKGGKPRS
        E+TVL           Y   D+    S D  A+ + Y + ++  +ILNPGD ALGYD   +N  D +L    ++ QLP+ +L+KK+Y  K   +    R 
Subjt:  EYTVL-----------YNKEDV----STDVNASVSKYTL-ANTQDILNPGDYALGYDPYGANSNDMELKEY-ESLQLPEAILIKKSYGEKCQKKGGKPRS

Query:  WKLKSLKMDVDELLKQGVDN
        W  K       E+ K+G++N
Subjt:  WKLKSLKMDVDELLKQGVDN

Q5BLF0 60S ribosomal export protein NMD3

2.4e-30

26.84

Show/hide

Query:  GIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIINTL---------------YQKRIEV
        G +L C CG+PI PN AN+CV CL ++VDI+E + KQ TI                              +K++  ++               + KRI++
Subjt:  GIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIR-----------------------------IKRIINTL---------------YQKRIEV

Query:  KLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGVKFVEF
        KL +QK V +GAIL+Q + VE+V+Q  +CE C RV+A  D     VQ+RQ   H++TF+++EQ ILKH       RI++++ G+ F++  + +  K V+F
Subjt:  KLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGVKFVEF

Query:  IGKVARIESRHDKLFLM--ILRVTFTTISTLSLFKYP------------------------------------------------QYYWRTSFRSLLTSR
        +       S+  +  +   +   T+   ST S+   P                                                  +WR  F SL + R
Subjt:  IGKVARIESRHDKLFLM--ILRVTFTTISTLSLFKYP------------------------------------------------QYYWRTSFRSLLTSR

Query:  QLVEYTV----LYNKEDVSTDVNASVSKYTLANT--------------------QDILNPGDYALGYDPYGANSNDMELKEYESLQLPEAILIKKSYGEK
        QL E+ +    +   + +        +K+TLA                        +LN GD  LG+D   AN ND  L +     +P+ +LIKKSY   
Subjt:  QLVEYTV----LYNKEDVSTDVNASVSKYTLANT--------------------QDILNPGDYALGYDPYGANSNDMELKEYESLQLPEAILIKKSYGEK

Query:  CQKKGGKPRSWKLKSLKMDVD
         + K  + R WKLK +  + D
Subjt:  CQKKGGKPRSWKLKSLKMDVD

Q6GNS3 60S ribosomal export protein NMD3

2.9e-31

27.51

Show/hide

Query:  GIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQ-----------------------------FTIRIKRIINTL---------------YQKRIEV
        G +L C+CGIPI PN AN+CV CL ++VDI+E + KQ                              T+ +K++   L               + KR++V
Subjt:  GIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQ-----------------------------FTIRIKRIINTL---------------YQKRIEV

Query:  KLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGVKFVEF
        KL +QK V +GAIL+Q ++V+YV+Q  +C+ C RV+A  D     VQ+RQ V H++TF+++EQ ILKH       R+++++ G+ F++  + +G K VEF
Subjt:  KLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGVKFVEF

Query:  IG-------KVARIESRHD--------------------------------------KLFLMILRVTFT----TISTLSLFKYP-QYYWRTSFRSLLTSR
        +        K ++    HD                                          +  RVT T      STL + +     YWR  F SL   +
Subjt:  IG-------KVARIESRHD--------------------------------------KLFLMILRVTFT----TISTLSLFKYP-QYYWRTSFRSLLTSR

Query:  QLVEYTVL-----------------YNKE-------DVSTDVNASVSKYTLANTQDILNPGDYALGYDPYGANSNDMELKEYESLQLPEAILIKKSYGEK
        Q+ E+ V+                  NK          ++++N +   +   +   +LNPGD  LG+D    N ND  + +     +P+ +LIKKSY   
Subjt:  QLVEYTVL-----------------YNKE-------DVSTDVNASVSKYTLANTQDILNPGDYALGYDPYGANSNDMELKEYESLQLPEAILIKKSYGEK

Query:  CQKKGGKPRSWKLKSLKMDVDELLKQGVD
         + +  + R+WKLK +  D     ++G+D
Subjt:  CQKKGGKPRSWKLKSLKMDVDELLKQGVD

Q6P2Z6 60S ribosomal export protein NMD3

5.8e-32

27.51

Show/hide

Query:  GIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQ-----------------------------FTIRIKRIINTL---------------YQKRIEV
        G +L C+CGIPI PN AN+CV CL  +VDI+E + KQ                              T+ +K++   L               + KR++V
Subjt:  GIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQ-----------------------------FTIRIKRIINTL---------------YQKRIEV

Query:  KLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGVKFVEF
        KL +QK V +GAIL+Q ++V+Y++Q  +C+ C RV+A  D     VQ+RQ V H++TF+++EQ ILKH       R+++++ G+ F++  + +  K VEF
Subjt:  KLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGVKFVEF

Query:  IG-------KVARIESRHD--------------------------------------KLFLMILRVTFT----TISTLSLFKYP-QYYWRTSFRSLLTSR
        +        K ++    HD                                          + +RVT T      STL + +     YWR+ F SL   +
Subjt:  IG-------KVARIESRHD--------------------------------------KLFLMILRVTFT----TISTLSLFKYP-QYYWRTSFRSLLTSR

Query:  QLVEYTVL-----------------YNKE-------DVSTDVNASVSKYTLANTQDILNPGDYALGYDPYGANSNDMELKEYESLQLPEAILIKKSYGEK
        QL E+ V+                  NK          ++++N +   +   +   +LNPGD  LG+D    N ND  + +     +P+ +LIKKSY   
Subjt:  QLVEYTVL-----------------YNKE-------DVSTDVNASVSKYTLANTQDILNPGDYALGYDPYGANSNDMELKEYESLQLPEAILIKKSYGEK

Query:  CQKKGGKPRSWKLKSLKMDVDELLKQGVD
         + K  + R+WKLK ++ D     ++G+D
Subjt:  CQKKGGKPRSWKLKSLKMDVDELLKQGVD

Q99L48 60S ribosomal export protein NMD3

4.2e-30

27.57

Show/hide

Query:  IQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTI--------------------------------RIKRIINTL------------YQ
        I+ + G +L C+CG+PI+PN ANICV CL S+VDI++ + KQ +I                                +IK  ++ +            + 
Subjt:  IQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTI--------------------------------RIKRIINTL------------YQ

Query:  KRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGV
        KR++VKL +QK V +GAIL+Q ++V+YV+Q  +C  C RV+A  D     +Q+RQ   H++TF+++EQ ILK+       RI++++ G+ F++  + +  
Subjt:  KRIEVKLKVQK-VRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGV

Query:  KFVEFIGKV--ARIESRHDKLFLMILRVTFTTISTLSLFKYP------------------------------------------------QYYWRTSFRS
        K VEF+  +   R ++    +   I   T+   ST S+   P                                                  +W   F S
Subjt:  KFVEFIGKV--ARIESRHDKLFLMILRVTFTTISTLSLFKYP------------------------------------------------QYYWRTSFRS

Query:  LLTSRQLVEYTVL--YNKEDVSTDVNASV--SKYTLA----------NTQ----------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEAILIKK
        L   +QL E+ V+      D+     A V   K+TL           NT            +LNPGD  LG+D    N ND  + +  S ++P+ +LIKK
Subjt:  LLTSRQLVEYTVL--YNKEDVSTDVNASV--SKYTLA----------NTQ----------DILNPGDYALGYDPYGANSNDMELKEYESLQLPEAILIKK

Query:  SYGEKCQKKGGKPRSWKLKSLKMDVDEL
        SY    + K  + R+WKLK L  D + +
Subjt:  SYGEKCQKKGGKPRSWKLKSLKMDVDEL

Arabidopsis top hits

e value

%identity

Alignment

AT2G03820.1 nonsense-mediated mRNA decay NMD3 family protein

1.6e-69

41.72

Show/hide

Query:  EAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQ-----------------------------FTIRIKRIIN-------------
        E+G+F +QQTIG VL CKCG+P+APNAAN+CV CL SEVDITE LQK                               T  IKR+ N             
Subjt:  EAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQ-----------------------------FTIRIKRIIN-------------

Query:  -TLYQKRIEVKLKVQ-KVRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCD
           + KRI+VKL VQ +V +GA+LEQSY VEY ++D+LCESCSR QANPDQ V  +QLRQHVSHRRTFF++EQ IL+H AA+RA RIQQ+  G+ FFF +
Subjt:  -TLYQKRIEVKLKVQ-KVRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQRVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCD

Query:  RSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQYYWR
        +S+   FVEF+ KV  IE R D+                                              L++       I+ L        F   + YWR
Subjt:  RSYGVKFVEFIGKVARIESRHDKLF--------------------------------------------LMILRVTFTTISTLS------LFKYPQYYWR

Query:  TSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ------------------DILNPGDYALGYDPYGANSNDMELKEYE---SLQLPEAILI
        + FRS LTSRQLV+Y V ++ E    +      KY L+  Q                   IL PGD ALGYD YGAN ND E+++Y       LPEAILI
Subjt:  TSFRSLLTSRQLVEYTVLYNKEDVSTDVNASVSKYTLANTQ------------------DILNPGDYALGYDPYGANSNDMELKEYE---SLQLPEAILI

Query:  KKSYGEKCQKKGGKPRSWKLKSLKMDVDE
        KK Y E+ ++K  K R+WKLKSL M++D+
Subjt:  KKSYGEKCQKKGGKPRSWKLKSLKMDVDE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGGAGAAGCAGGATTGTTTATGATTCAGCAAACCATTGGCATTGTCTTACGTTGCAAATGTGGAATTCCCATTGCACCAAATGCTGCCAATATATGTGTCAAGTG
CTTGTGTTCTGAAGTTGATATCACAGAAAGTTTGCAGAAGCAATTCACAATTAGAATCAAAAGAATTATTAACACTCTGTATCAAAAGAGAATCGAGGTCAAGTTGAAGG
TTCAAAAAGTTCGTCATGGAGCAATTTTGGAACAATCCTACATTGTTGAGTATGTTATGCAGGATCACTTGTGTGAGTCTTGCTCAAGGGTCCAGGCTAACCCTGACCAA
AGGGTGGATTGTGTTCAACTCAGGCAGCACGTCTCACACCGACGTACTTTTTTCTTCATGGAGCAACCGATACTCAAGCACAGTGCTGCTGCTCGTGCCACAAGAATCCA
ACAGATGTATCTAGGTGTTCACTTCTTTTTTTGTGATAGGAGTTATGGTGTTAAGTTTGTGGAATTTATTGGAAAAGTTGCTCGGATTGAAAGTCGCCATGATAAACTGT
TTCTCATGATCCTAAGAGTAACATTCACAACCATAAGCACACTTTCCCTGTTTAAATATCCCCAATATTATTGGAGGACGTCCTTTAGGTCTCTACTTACTAGCAGGCAA
CTTGTGGAATATACTGTATTGTATAATAAAGAAGATGTTTCCACTGATGTCAATGCCAGTGTTTCGAAGTATACTTTGGCCAATACTCAAGACATTCTAAACCCAGGGGA
TTATGCCCTTGGCTATGATCCTTATGGAGCCAATAGTAATGATATGGAGCTTAAAGAGTACGAGAGTCTTCAGCTTCCAGAGGCAATATTAATCAAGAAGAGTTACGGAG
AAAAGTGTCAGAAAAAGGGTGGAAAACCTCGATCATGGAAGCTTAAATCTTTGAAAATGGATGTTGATGAACTCTTAAAACAGGGAGTGGACAACAAAATTACATTAACT
CTTAAACAACAAAATTACATGCCCTTAAAAAAAACACCCCTAAGCACAGTCGATTACTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAGEAGLFMIQQTIGIVLRCKCGIPIAPNAANICVKCLCSEVDITESLQKQFTIRIKRIINTLYQKRIEVKLKVQKVRHGAILEQSYIVEYVMQDHLCESCSRVQANPDQ
RVDCVQLRQHVSHRRTFFFMEQPILKHSAAARATRIQQMYLGVHFFFCDRSYGVKFVEFIGKVARIESRHDKLFLMILRVTFTTISTLSLFKYPQYYWRTSFRSLLTSRQ
LVEYTVLYNKEDVSTDVNASVSKYTLANTQDILNPGDYALGYDPYGANSNDMELKEYESLQLPEAILIKKSYGEKCQKKGGKPRSWKLKSLKMDVDELLKQGVDNKITLT
LKQQNYMPLKKTPLSTVDY

PI0019809 (gene) of Melon (PI 482460) v1 genome