; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0019822 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019822
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr06:12774149..12775896
RNA-Seq ExpressionPI0019822
SyntenyPI0019822
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]1.3e-5875.45Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG RPSSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR
        PTTYSQAV  +KRF+PRPEIK+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]1.9e-5775.76Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+R SSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK
        PTTYSQAV P+KRF+PRP+IK YFQK +V+YDP IE EYQSLT++E VSKIFPE FNFLPEDLRK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.9e-6679.21Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK
        PTTYSQAV P+KRF+PRPEIK+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]3.5e-5677.12Show/hide
Query:  RVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAP
        R +STSS+G+RPSSS N APSPMSADQYAMDLGFTTVTRS+ARSS I+I SPT+SSTPPR SANL+RPS  + QMRP ASPLSN ESSTPPTTYSQ + P
Subjt:  RVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAP

Query:  EKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDL
        +KRF+PR EIK+YFQK V++YD IIEPEYQSLT++ETVSKIFP+ FNFLP+DL
Subjt:  EKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDL

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]2.9e-5849.22Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+ PSSS N APSPMS DQYAMDLG+TTV +S+++SSGI I SP ESSTPPRPS NL+ P G + QMR  ASP SN ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLK
        PTTYSQAV P+K+F+PR EIK+YFQK +VIYDPIIE EYQ                                                            
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLK

Query:  IFKAINQPIGTKEFLQKNPFQNLSYLNPTLTRITSKLGLELFENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSSSSSIQ
                                                  +NG LQDIDQ+KNA+FLNDK K LAAL QAT DADFQRLLSTAVN S+SSK + S IQ
Subjt:  IFKAINQPIGTKEFLQKNPFQNLSYLNPTLTRITSKLGLELFENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSSSSSIQ

Query:  EDDELASPEYDLNDPFLDSQP
        ED+E    EYDL+DPFLDSQP
Subjt:  EDDELASPEYDLNDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein1.4e-6679.21Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK
        PTTYSQAV P+KRF+PRPEIK+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTRKFYEFIL DTK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTK

A0A5D3BI61 Uncharacterized protein1.4e-5849.22Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+ PSSS N APSPMS DQYAMDLG+TTV +S+++SSGI I SP ESSTPPRPS NL+ P G + QMR  ASP SN ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLK
        PTTYSQAV P+K+F+PR EIK+YFQK +VIYDPIIE EYQ                                                            
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLK

Query:  IFKAINQPIGTKEFLQKNPFQNLSYLNPTLTRITSKLGLELFENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSSSSSIQ
                                                  +NG LQDIDQ+KNA+FLNDK K LAAL QAT DADFQRLLSTAVN S+SSK + S IQ
Subjt:  IFKAINQPIGTKEFLQKNPFQNLSYLNPTLTRITSKLGLELFENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSSSSSIQ

Query:  EDDELASPEYDLNDPFLDSQP
        ED+E    EYDL+DPFLDSQP
Subjt:  EDDELASPEYDLNDPFLDSQP

A0A5D3BM67 Uncharacterized protein4.0e-5379.56Show/hide
Query:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYD
        MSADQYAMDLGFTTVTRS++RSS IRIES TESSTPPRPSANL+RP GG  QMRPPASP SN ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK +V+YD
Subjt:  MSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYD

Query:  PIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKF
         IIEPEYQS+T+++TVSKIF + FN LPEDLRKTR F
Subjt:  PIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKF

A0A5D3E4J4 Uncharacterized protein9.1e-5875.76Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG+R SSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK
        PTTYSQAV P+KRF+PRP+IK YFQK +V+YDP IE EYQSLT++E VSKIFPE FNFLPEDLRK
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK

E5GCE6 Uncharacterized protein6.3e-5975.45Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP
        MSS +G  RGR +STSSKG RPSSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTP

Query:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR
        PTTYSQAV  +KRF+PRPEIK+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Subjt:  PTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGC
CCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAACCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAAC
CTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGGTTTAGAGTTGTTTGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCT
GAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCATCGT
CTTCCTCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATTTTACTCAGTAAATATTGTTCCGTCATCCAG
AAATCCAGGCGAAAAATGAAGACAACAAAGCTTCAAGAAATTGCGTATTTCATGGAGTATTCGACTACGTTAGATGGTCCCGGCATAAGTCGCAAGATTTGGCGCGGTGA
GCCCGTTGGTCAGTCTGTAATCCGCCGTGGGGAATACGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTC
AAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGC
CCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAACCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAAC
CTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGGTTTAGAGTTGTTTGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCT
GAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCATCGT
CTTCCTCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATTTTACTCAGTAAATATTGTTCCGTCATCCAG
AAATCCAGGCGAAAAATGAAGACAACAAAGCTTCAAGAAATTGCGTATTTCATGGAGTATTCGACTACGTTAGATGGTCCCGGCATAAGTCGCAAGATTTGGCGCGGTGA
GCCCGTTGGTCAGTCTGTAATCCGCCGTGGGGAATACGATTAG
Protein sequenceShow/hide protein sequence
MSSVRGRGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEK
RFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINQPIGTKEFLQKNPFQN
LSYLNPTLTRITSKLGLELFENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSSSSSIQEDDELASPEYDLNDPFLDSQPILLSKYCSVIQ
KSRRKMKTTKLQEIAYFMEYSTTLDGPGISRKIWRGEPVGQSVIRRGEYD