; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0019838 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019838
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:15293669..15294490
RNA-Seq ExpressionPI0019838
SyntenyPI0019838
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040852.1 hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa]9.6e-3546.23Show/hide
Query:  MLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSVQAVNQMDDLGCVGC----------
        ML+SSY QIK TLD + +N++E  +DD   +   RGR+D GMD+NV+VALQGQ+T +  LL+SM +SQV+A+ + VQAV Q+D++  VGC          
Subjt:  MLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSVQAVNQMDDLGCVGC----------

Query:  ------------------------GASGSHARYQNNRPQHS--QHQRQHTTTTPSISSYMENLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRP
                                G +  H +   +RP +S  QHQ Q TT TPS  S M  L+R+YMQ+ DA +QSQ +SI NLE+ LGQLA DF  RP
Subjt:  ------------------------GASGSHARYQNNRPQHS--QHQRQHTTTTPSISSYMENLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRP

Query:  QGSLPSNIETPN
         GSLPSNIE PN
Subjt:  QGSLPSNIETPN

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]5.4e-4648.43Show/hide
Query:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNR------RGGRGRSDQGMDKNVVVALQGQMTT
        M+K CPH+ IPEC+LME FYFGL+K T Q+ ++VF GGML+SSYNQIK  LDTMASN++EW ++ FG+R      +G RGR + G+D +++VALQGQ+  
Subjt:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNR------RGGRGRSDQGMDKNVVVALQGQMTT

Query:  INNLLKSMTISQVNAIESSVQAVNQMDDLGCVGCGASGSHARYQNNRPQHSQHQRQHTTTTPSISSYMEN---LIREYMQKNDALLQSQASSIRNLEVQL
        + N+L+SM + QVN + SSVQ V Q++++GCVGC A                H          I +Y++N    I          + SQASSI+N+E+QL
Subjt:  INNLLKSMTISQVNAIESSVQAVNQMDDLGCVGCGASGSHARYQNNRPQHSQHQRQHTTTTPSISSYMEN---LIREYMQKNDALLQSQASSIRNLEVQL

Query:  GQLASDFFRRPQGSLPSNIETPN
        GQL SDF RRP+ S PSN ETPN
Subjt:  GQLASDFFRRPQGSLPSNIETPN

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]9.0e-3361.16Show/hide
Query:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLK
        +VKACP + IPEC+ MEVFYFGL+K T Q V+ +FVGGML+SSYNQIK TLD+M++N++EWD+  FG+R   RGR+ +G+DK+VVV LQGQM  +NNLL+
Subjt:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLK

Query:  SMTISQVNAIESSVQAVNQMD
        SMT+SQVNA  + + AV Q++
Subjt:  SMTISQVNAIESSVQAVNQMD

XP_030494802.1 uncharacterized protein LOC115710583 [Cannabis sativa]9.7e-2737.76Show/hide
Query:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQG-MDKNVVVALQGQMTTINNLL
        +++ CPH+ IP CI +E FY GLN A++  +D    G +L  SYN+    L+ +ASNN +W        R    R   G ++ + + AL  QM ++ N+L
Subjt:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQG-MDKNVVVALQGQMTTINNLL

Query:  KSMTISQVNAIESSVQ--AVNQMDDLGCVGC-------------------GASGSHARY----QNNRPQHSQHQRQHTTTTP--SISSYMENLIREYMQK
        K+M +        SVQ  A  Q  ++ CV C                   GAS S A      Q+  P  SQ  R      P  S +S +E+L+R+YM K
Subjt:  KSMTISQVNAIESSVQ--AVNQMDDLGCVGC-------------------GASGSHARY----QNNRPQHSQHQRQHTTTTP--SISSYMENLIREYMQK

Query:  NDALLQSQASSIRNLEVQLGQLASDFFRRPQGSLPSNIETP
        NDA++QSQA+S++NLE+QLGQLA+D   RPQG+LPS+ E P
Subjt:  NDALLQSQASSIRNLEVQLGQLASDFFRRPQGSLPSNIETP

XP_038889363.1 uncharacterized protein LOC120079279 [Benincasa hispida]2.5e-2733.6Show/hide
Query:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQG-MDKNVVVALQGQMTTINNLL
        +VK C H  IP+C+LM+ FY GLN++TQ   D     G +  +Y + KV L  ++ N ++  +D +G R   R R+D   +  + +  L  QM  + +LL
Subjt:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQG-MDKNVVVALQGQMTTINNLL

Query:  KSMTISQ--VNAIESSVQAVNQMDDLGCVGCGASGSHARYQN------------------------NRPQHSQHQRQ----------HTTTTPSISSYME
        ++M ++Q  ++ I +   A  Q+  + CV CG  G HA + N                        N P   Q+Q Q           ++ T + SS +E
Subjt:  KSMTISQ--VNAIESSVQAVNQMDDLGCVGCGASGSHARYQN------------------------NRPQHSQHQRQ----------HTTTTPSISSYME

Query:  NLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRPQGSLPSNIETP
        +L+++Y++KND ++QSQ SSIRNLE+Q+GQLA++   R  G+LPSN E P
Subjt:  NLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRPQGSLPSNIETP

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein4.4e-3361.16Show/hide
Query:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLK
        +VKACP + IPEC+ MEVFYFGL+K T Q V+ +FVGGML+SSYNQIK TLD+M++N++EWD+  FG+R   RGR+ +G+DK+VVV LQGQM  +NNLL+
Subjt:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLK

Query:  SMTISQVNAIESSVQAVNQMD
        SMT+SQVNA  + + AV Q++
Subjt:  SMTISQVNAIESSVQAVNQMD

A0A0A0L0Y4 Uncharacterized protein4.8e-2447.29Show/hide
Query:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGN------RRGGRGRSDQGMDKNVVVALQGQMTT
        M+K C H+ I  C+++E FYFGL++ TQQ VD VF+GGML+ S N IK TLD M SN++EW +++FG+       R  +GR+++G + N ++ LQ Q+T 
Subjt:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGN------RRGGRGRSDQGMDKNVVVALQGQMTT

Query:  INNLLKSMTISQVNAIESSVQAVNQMDDL
        +N LL+SM +SQ+NAI SS++ V+Q+ +L
Subjt:  INNLLKSMTISQVNAIESSVQAVNQMDDL

A0A5A7TUE1 Uncharacterized protein5.0e-2154.9Show/hide
Query:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRR---GGRGRSDQGMDKNVVVALQGQMTTINN
        +VKAC H+ I +C+LME FYF L++  QQTVDVVFVGG+L++SYNQ K  LDTM SN++E  +D   +++     RGR+D+GMD+N +V LQGQ+T +N 
Subjt:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRR---GGRGRSDQGMDKNVVVALQGQMTTINN

Query:  LL
        LL
Subjt:  LL

A0A5D3CC26 Uncharacterized protein2.6e-4648.43Show/hide
Query:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNR------RGGRGRSDQGMDKNVVVALQGQMTT
        M+K CPH+ IPEC+LME FYFGL+K T Q+ ++VF GGML+SSYNQIK  LDTMASN++EW ++ FG+R      +G RGR + G+D +++VALQGQ+  
Subjt:  MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNR------RGGRGRSDQGMDKNVVVALQGQMTT

Query:  INNLLKSMTISQVNAIESSVQAVNQMDDLGCVGCGASGSHARYQNNRPQHSQHQRQHTTTTPSISSYMEN---LIREYMQKNDALLQSQASSIRNLEVQL
        + N+L+SM + QVN + SSVQ V Q++++GCVGC A                H          I +Y++N    I          + SQASSI+N+E+QL
Subjt:  INNLLKSMTISQVNAIESSVQAVNQMDDLGCVGCGASGSHARYQNNRPQHSQHQRQHTTTTPSISSYMEN---LIREYMQKNDALLQSQASSIRNLEVQL

Query:  GQLASDFFRRPQGSLPSNIETPN
        GQL SDF RRP+ S PSN ETPN
Subjt:  GQLASDFFRRPQGSLPSNIETPN

A0A5D3D2S0 Uncharacterized protein4.7e-3546.23Show/hide
Query:  MLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSVQAVNQMDDLGCVGC----------
        ML+SSY QIK TLD + +N++E  +DD   +   RGR+D GMD+NV+VALQGQ+T +  LL+SM +SQV+A+ + VQAV Q+D++  VGC          
Subjt:  MLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAIESSVQAVNQMDDLGCVGC----------

Query:  ------------------------GASGSHARYQNNRPQHS--QHQRQHTTTTPSISSYMENLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRP
                                G +  H +   +RP +S  QHQ Q TT TPS  S M  L+R+YMQ+ DA +QSQ +SI NLE+ LGQLA DF  RP
Subjt:  ------------------------GASGSHARYQNNRPQHS--QHQRQHTTTTPSISSYMENLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRP

Query:  QGSLPSNIETPN
         GSLPSNIE PN
Subjt:  QGSLPSNIETPN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAAGCATGCCCCCACAATGCCATTCCTGAATGCATATTGATGGAGGTGTTCTATTTTGGTCTAAACAAGGCGACACAACAGACTGTTGATGTTGTGTTTGTAGG
TGGTATGTTGAAGAGTTCATACAACCAGATAAAGGTGACGCTGGATACGATGGCCAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAG
GAAGAAGTGATCAAGGAATGGACAAGAATGTCGTAGTGGCGTTGCAAGGACAAATGACTACGATAAATAATCTTCTGAAATCTATGACAATATCGCAGGTTAATGCCATC
GAAAGCTCTGTGCAGGCGGTTAATCAAATGGATGACTTGGGATGCGTGGGATGCGGCGCATCTGGCTCCCACGCGAGGTACCAAAACAACAGACCACAACATTCCCAACA
TCAACGTCAACACACCACCACTACTCCATCCATTTCTTCATATATGGAAAACCTTATCCGCGAGTATATGCAAAAGAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAA
TTCGCAATCTGGAGGTGCAGTTGGGGCAGTTAGCTAGCGATTTCTTTAGAAGGCCACAAGGATCTCTCCCAAGCAATATAGAAACGCCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTAAAGCATGCCCCCACAATGCCATTCCTGAATGCATATTGATGGAGGTGTTCTATTTTGGTCTAAACAAGGCGACACAACAGACTGTTGATGTTGTGTTTGTAGG
TGGTATGTTGAAGAGTTCATACAACCAGATAAAGGTGACGCTGGATACGATGGCCAGCAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAG
GAAGAAGTGATCAAGGAATGGACAAGAATGTCGTAGTGGCGTTGCAAGGACAAATGACTACGATAAATAATCTTCTGAAATCTATGACAATATCGCAGGTTAATGCCATC
GAAAGCTCTGTGCAGGCGGTTAATCAAATGGATGACTTGGGATGCGTGGGATGCGGCGCATCTGGCTCCCACGCGAGGTACCAAAACAACAGACCACAACATTCCCAACA
TCAACGTCAACACACCACCACTACTCCATCCATTTCTTCATATATGGAAAACCTTATCCGCGAGTATATGCAAAAGAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAA
TTCGCAATCTGGAGGTGCAGTTGGGGCAGTTAGCTAGCGATTTCTTTAGAAGGCCACAAGGATCTCTCCCAAGCAATATAGAAACGCCAAATTAG
Protein sequenceShow/hide protein sequence
MVKACPHNAIPECILMEVFYFGLNKATQQTVDVVFVGGMLKSSYNQIKVTLDTMASNNEEWDEDDFGNRRGGRGRSDQGMDKNVVVALQGQMTTINNLLKSMTISQVNAI
ESSVQAVNQMDDLGCVGCGASGSHARYQNNRPQHSQHQRQHTTTTPSISSYMENLIREYMQKNDALLQSQASSIRNLEVQLGQLASDFFRRPQGSLPSNIETPN