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PI0019876 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019876
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr07:15612701..15613153
RNA-Seq ExpressionPI0019876
SyntenyPI0019876
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032827.1 putative retrotransposon protein [Cucumis melo var. makuwa]1.7e-2760.58Show/hide
Query:  QTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHPKKRE
        + RQ+RFNTIKAF N KLAK S VSPHVLK+KSYLE L+RLGL I+ KL I  F+             ELHGMLKT  L+IKSS EVL VQK K+ KKR 
Subjt:  QTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHPKKRE

Query:  RDEGKGRGKFVVKASKVDAHAAP--RPKSKRPKPPKE
         D+GKG  K  +K SKVDA   P  RPK K PKPPKE
Subjt:  RDEGKGRGKFVVKASKVDAHAAP--RPKSKRPKPPKE

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]1.6e-3567.38Show/hide
Query:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHP
        MFQEQ RQER NTIKAFVN KLAKGSPVSP+VLKMKSY                   FVMSYNMH +  SLT+LHGMLKT +L+IK S EVL VQK K+P
Subjt:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHP

Query:  KKRERDEGKGRGKFVVKASKVDAHAAP--RPKSKRPKPPKE
        KKRERD+GKG+ K VVKASKVDA A P  RPK K PKPPKE
Subjt:  KKRERDEGKGRGKFVVKASKVDAHAAP--RPKSKRPKPPKE

KAA0063133.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-3565.67Show/hide
Query:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDL-----------FVMSYNMHGMLNSLTELHGMLKTTELHIKSSP
        M QEQ RQE+FN I  FVNCKL +GS VSPHVLK+KSYLE LQRLGL+I+ +L ID+           FVMSYNMHGM  SLT+LHGMLK ++L+IKS+ 
Subjt:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDL-----------FVMSYNMHGMLNSLTELHGMLKTTELHIKSSP

Query:  EVLRVQKEKHPKKRERDEGKGRGKFVVKASKVDA
        EVL VQK K+PKKR  D+GKG GK VVK SKVDA
Subjt:  EVLRVQKEKHPKKRERDEGKGRGKFVVKASKVDA

KAA0066400.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.1e-2262.83Show/hide
Query:  ELLQRLGLKINRKLVIDL-----------FVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHPKKRERDEGKGRGKFVVKASKVDAHAAPR
        +L   LGL+I+ KL IDL           FVM++NMHGM  SLTELH MLK  EL+IKSS EVL VQK K+PKKRERD+G G+GK VVKAS+VDA  APR
Subjt:  ELLQRLGLKINRKLVIDL-----------FVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHPKKRERDEGKGRGKFVVKASKVDAHAAPR

Query:  --PKSKRPKPPKE
          PK K PKPPKE
Subjt:  --PKSKRPKPPKE

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]6.5e-2456.03Show/hide
Query:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHP
        MFQEQ RQER NTIKAFVN KLAKGSPVSP+VLKMKSY                                         T +L+IKSS EVL VQK K+P
Subjt:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHP

Query:  KKRERDEGKGRGKFVVKASKVDAHAA--PRPKSKRPKPPKE
        KKRERD+GKG+ K VVKASKVDA A   PRPK K PKPPKE
Subjt:  KKRERDEGKGRGKFVVKASKVDAHAA--PRPKSKRPKPPKE

TrEMBL top hitse value%identityAlignment
A0A5A7UN47 Uncharacterized protein8.0e-3667.38Show/hide
Query:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHP
        MFQEQ RQER NTIKAFVN KLAKGSPVSP+VLKMKSY                   FVMSYNMH +  SLT+LHGMLKT +L+IK S EVL VQK K+P
Subjt:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHP

Query:  KKRERDEGKGRGKFVVKASKVDAHAAP--RPKSKRPKPPKE
        KKRERD+GKG+ K VVKASKVDA A P  RPK K PKPPKE
Subjt:  KKRERDEGKGRGKFVVKASKVDAHAAP--RPKSKRPKPPKE

A0A5A7V4Y1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-3565.67Show/hide
Query:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDL-----------FVMSYNMHGMLNSLTELHGMLKTTELHIKSSP
        M QEQ RQE+FN I  FVNCKL +GS VSPHVLK+KSYLE LQRLGL+I+ +L ID+           FVMSYNMHGM  SLT+LHGMLK ++L+IKS+ 
Subjt:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDL-----------FVMSYNMHGMLNSLTELHGMLKTTELHIKSSP

Query:  EVLRVQKEKHPKKRERDEGKGRGKFVVKASKVDA
        EVL VQK K+PKKR  D+GKG GK VVK SKVDA
Subjt:  EVLRVQKEKHPKKRERDEGKGRGKFVVKASKVDA

A0A5D3BP05 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-2262.83Show/hide
Query:  ELLQRLGLKINRKLVIDL-----------FVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHPKKRERDEGKGRGKFVVKASKVDAHAAPR
        +L   LGL+I+ KL IDL           FVM++NMHGM  SLTELH MLK  EL+IKSS EVL VQK K+PKKRERD+G G+GK VVKAS+VDA  APR
Subjt:  ELLQRLGLKINRKLVIDL-----------FVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHPKKRERDEGKGRGKFVVKASKVDAHAAPR

Query:  --PKSKRPKPPKE
          PK K PKPPKE
Subjt:  --PKSKRPKPPKE

A0A5D3C6L2 Putative retrotransposon protein3.1e-2456.03Show/hide
Query:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHP
        MFQEQ RQER NTIKAFVN KLAKGSPVSP+VLKMKSY                                         T +L+IKSS EVL VQK K+P
Subjt:  MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHP

Query:  KKRERDEGKGRGKFVVKASKVDAHAA--PRPKSKRPKPPKE
        KKRERD+GKG+ K VVKASKVDA A   PRPK K PKPPKE
Subjt:  KKRERDEGKGRGKFVVKASKVDAHAA--PRPKSKRPKPPKE

A0A5D3E2P1 Putative retrotransposon protein8.0e-2860.58Show/hide
Query:  QTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHPKKRE
        + RQ+RFNTIKAF N KLAK S VSPHVLK+KSYLE L+RLGL I+ KL I  F+             ELHGMLKT  L+IKSS EVL VQK K+ KKR 
Subjt:  QTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHPKKRE

Query:  RDEGKGRGKFVVKASKVDAHAAP--RPKSKRPKPPKE
         D+GKG  K  +K SKVDA   P  RPK K PKPPKE
Subjt:  RDEGKGRGKFVVKASKVDAHAAP--RPKSKRPKPPKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCAAGAGCAAACAAGACAAGAGAGGTTCAACACCATCAAAGCTTTTGTCAACTGCAAACTGGCTAAGGGTAGTCCAGTTAGCCCTCATGTTCTCAAGATGAAAAG
TTATCTTGAGCTACTCCAAAGGTTAGGACTTAAGATCAATCGCAAGCTTGTGATTGATTTGTTTGTAATGAGTTACAACATGCATGGGATGTTGAACAGTTTGACTGAGC
TGCATGGGATGCTAAAAACTACTGAGTTGCACATCAAGTCCAGTCCTGAGGTTTTGAGGGTGCAAAAAGAGAAGCATCCCAAGAAAAGAGAACGAGATGAAGGAAAGGGT
AGGGGTAAATTTGTTGTCAAGGCATCAAAAGTTGATGCTCATGCTGCACCTAGGCCCAAATCTAAAAGGCCTAAACCACCCAAGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCAAGAGCAAACAAGACAAGAGAGGTTCAACACCATCAAAGCTTTTGTCAACTGCAAACTGGCTAAGGGTAGTCCAGTTAGCCCTCATGTTCTCAAGATGAAAAG
TTATCTTGAGCTACTCCAAAGGTTAGGACTTAAGATCAATCGCAAGCTTGTGATTGATTTGTTTGTAATGAGTTACAACATGCATGGGATGTTGAACAGTTTGACTGAGC
TGCATGGGATGCTAAAAACTACTGAGTTGCACATCAAGTCCAGTCCTGAGGTTTTGAGGGTGCAAAAAGAGAAGCATCCCAAGAAAAGAGAACGAGATGAAGGAAAGGGT
AGGGGTAAATTTGTTGTCAAGGCATCAAAAGTTGATGCTCATGCTGCACCTAGGCCCAAATCTAAAAGGCCTAAACCACCCAAGGAATGA
Protein sequenceShow/hide protein sequence
MFQEQTRQERFNTIKAFVNCKLAKGSPVSPHVLKMKSYLELLQRLGLKINRKLVIDLFVMSYNMHGMLNSLTELHGMLKTTELHIKSSPEVLRVQKEKHPKKRERDEGKG
RGKFVVKASKVDAHAAPRPKSKRPKPPKE