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PI0019888 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019888
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:12952469..12956616
RNA-Seq ExpressionPI0019888
SyntenyPI0019888
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]9.2e-1978.87Show/hide
Query:  MPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ-APQMLNN
        MPPP A  MVINHNDNQ EGDG DGLDDDQVTLL E RR GH VVR +GRGRAYQNIQRRAQQ APQ   N
Subjt:  MPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ-APQMLNN

KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]4.1e-4388.79Show/hide
Query:  MDNQNDEVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQN
        M+NQNDEV+LREAQQGVIARMIS+MEALTDRL+R EIENRARERMPPPLA  M+INHNDNQ EGDG D LDDDQVTLLGEPRRVGHGVVR RGRGRAYQN
Subjt:  MDNQNDEVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQN

Query:  IQRRAQQ
        IQRRAQQ
Subjt:  IQRRAQQ

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]2.3e-3081.32Show/hide
Query:  MEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ-APQMLNN
        MEALTDRL+RLEIENRARERMPPPLA  M INHN+NQYEGDG D LDDDQVTLL EPRRVGHGVVR RG G+AYQNIQRR QQ  PQ+  N
Subjt:  MEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ-APQMLNN

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]5.0e-3388.51Show/hide
Query:  MISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ
        MIS+MEALTDRL+R EIENRARERMPPPLA  M+INHNDNQ EGDG D LDDDQVTLLGEPRRVGHGVVR RGRGRAYQNIQRRAQQ
Subjt:  MISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]1.2e-1547.32Show/hide
Query:  EVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRAYQNIQ
        + R REA +G + RMI SMEALT+R+ RLE +N+A  R+PPP    ++   ++++YEGDG D  +DDQ T+L  PR     VG G+ RGRGRGR Y N Q
Subjt:  EVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRAYQNIQ

Query:  RRAQQAPQMLNN
        R  +   Q+  N
Subjt:  RRAQQAPQMLNN

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein4.5e-1978.87Show/hide
Query:  MPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ-APQMLNN
        MPPP A  MVINHNDNQ EGDG DGLDDDQVTLL E RR GH VVR +GRGRAYQNIQRRAQQ APQ   N
Subjt:  MPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ-APQMLNN

A0A5A7TK52 Retrotrans_gag domain-containing protein2.0e-4388.79Show/hide
Query:  MDNQNDEVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQN
        M+NQNDEV+LREAQQGVIARMIS+MEALTDRL+R EIENRARERMPPPLA  M+INHNDNQ EGDG D LDDDQVTLLGEPRRVGHGVVR RGRGRAYQN
Subjt:  MDNQNDEVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQN

Query:  IQRRAQQ
        IQRRAQQ
Subjt:  IQRRAQQ

A0A5A7TYI0 Uncharacterized protein1.1e-3081.32Show/hide
Query:  MEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ-APQMLNN
        MEALTDRL+RLEIENRARERMPPPLA  M INHN+NQYEGDG D LDDDQVTLL EPRRVGHGVVR RG G+AYQNIQRR QQ  PQ+  N
Subjt:  MEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ-APQMLNN

A0A5D3CHG3 Retrotrans_gag domain-containing protein2.4e-3388.51Show/hide
Query:  MISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ
        MIS+MEALTDRL+R EIENRARERMPPPLA  M+INHNDNQ EGDG D LDDDQVTLLGEPRRVGHGVVR RGRGRAYQNIQRRAQQ
Subjt:  MISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQ

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241156.0e-1647.32Show/hide
Query:  EVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRAYQNIQ
        + R REA +G + RMI SMEALT+R+ RLE +N+A  R+PPP    ++   ++++YEGDG D  +DDQ T+L  PR     VG G+ RGRGRGR Y N Q
Subjt:  EVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRAYQNIQ

Query:  RRAQQAPQMLNN
        R  +   Q+  N
Subjt:  RRAQQAPQMLNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATCAAAATGATGAAGTACGATTAAGAGAGGCACAACAAGGAGTTATTGCACGGATGATTAGTAGTATGGAAGCATTGACAGATCGTTTGGATAGGTTGGAGAT
TGAAAATCGGGCAAGAGAAAGAATGCCACCTCCTCTAGCACAGCATATGGTAATTAACCATAATGATAACCAATATGAGGGTGATGGTTTTGATGGTTTAGACGATGACC
AAGTTACATTACTTGGGGAGCCAAGACGTGTGGGACATGGAGTAGTTAGAGGAAGAGGTCGTGGAAGAGCTTATCAAAACATCCAAAGGAGAGCTCAACAAGCACCTCAG
ATGTTGAACAACAAAACAGAACATGAAGTAGAAAATGAGGCTCAACAAGCTCACACCAATTTAAGTAAAGAGGAAAATGAAGCACATGCTGAACATTCGTGGAAGAACTT
TCCAAATCAAACTAATCAAGAGACAATCATTATGCCTCAAGGCCTACTGACAAGAGCTAAAGCTAAAAGACTTCAAGATGGATTAAATGCTAAATTTTTAGCTTTTAATG
ACAAGTTGCAACAATTGGAATATCAAGAGTCATTTGGACACCCAAAAGTCATAATGAATCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAATCAAAATGATGAAGTACGATTAAGAGAGGCACAACAAGGAGTTATTGCACGGATGATTAGTAGTATGGAAGCATTGACAGATCGTTTGGATAGGTTGGAGAT
TGAAAATCGGGCAAGAGAAAGAATGCCACCTCCTCTAGCACAGCATATGGTAATTAACCATAATGATAACCAATATGAGGGTGATGGTTTTGATGGTTTAGACGATGACC
AAGTTACATTACTTGGGGAGCCAAGACGTGTGGGACATGGAGTAGTTAGAGGAAGAGGTCGTGGAAGAGCTTATCAAAACATCCAAAGGAGAGCTCAACAAGCACCTCAG
ATGTTGAACAACAAAACAGAACATGAAGTAGAAAATGAGGCTCAACAAGCTCACACCAATTTAAGTAAAGAGGAAAATGAAGCACATGCTGAACATTCGTGGAAGAACTT
TCCAAATCAAACTAATCAAGAGACAATCATTATGCCTCAAGGCCTACTGACAAGAGCTAAAGCTAAAAGACTTCAAGATGGATTAAATGCTAAATTTTTAGCTTTTAATG
ACAAGTTGCAACAATTGGAATATCAAGAGTCATTTGGACACCCAAAAGTCATAATGAATCTATAA
Protein sequenceShow/hide protein sequence
MDNQNDEVRLREAQQGVIARMISSMEALTDRLDRLEIENRARERMPPPLAQHMVINHNDNQYEGDGFDGLDDDQVTLLGEPRRVGHGVVRGRGRGRAYQNIQRRAQQAPQ
MLNNKTEHEVENEAQQAHTNLSKEENEAHAEHSWKNFPNQTNQETIIMPQGLLTRAKAKRLQDGLNAKFLAFNDKLQQLEYQESFGHPKVIMNL