CuGenDBv2

Gene ID	PI0019898
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	SWIM-type domain-containing protein
Genome location	chr08:9699233..9699529
RNA-Seq Expression	PI0019898
Synteny	PI0019898
Gene Ontology terms	GO:0010073 - meristem maintenance (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036768.1 uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]

1.0e-44

87.76

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Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKISTYAACYA QFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRYHNEMDW E SAQQRCSFC QLGHNRR CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

KAA0039601.1 uncharacterized protein E6C27_scaffold744G00780 [Cucumis melo var. makuwa]

2.9e-42

84.69

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Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKI TY ACYAPQFQPV HEDYWITPTSMPVL  DP LLRK GR KSSRYHNEMDW E SAQQRCSFC QLGHNR +CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

TYJ98405.1 uncharacterized protein E5676_scaffold4012G00010 [Cucumis melo var. makuwa]

1.2e-45

88.78

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Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKISTYAACYAPQFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRYHNEMDW E SAQQRCSFC QLGHNRR CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

TYK01705.1 uncharacterized protein E5676_scaffold775G00280 [Cucumis melo var. makuwa]

2.9e-42

84.69

Show/hide

Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKI TY ACYAPQFQPV HEDYWITPTSMPVL  DP LLRK GR KSSRYHNEMDW E SAQQRCSFC QLGHNR +CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

TYK18933.1 uncharacterized protein E5676_scaffold418G00150 [Cucumis melo var. makuwa]

5.2e-44

86.73

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Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKISTY ACYAPQFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRYHNEMDW E SAQQRCSF  QLGHNRR CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1X8 SWIM-type domain-containing protein

5.1e-45

87.76

Show/hide

Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKISTYAACYA QFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRYHNEMDW E SAQQRCSFC QLGHNRR CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

A0A5A7TD93 SWIM-type domain-containing protein

1.4e-42

84.69

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Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKI TY ACYAPQFQPV HEDYWITPTSMPVL  DP LLRK GR KSSRYHNEMDW E SAQQRCSFC QLGHNR +CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

A0A5D3BJ66 Uncharacterized protein

6.0e-46

88.78

Show/hide

Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKISTYAACYAPQFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRYHNEMDW E SAQQRCSFC QLGHNRR CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

A0A5D3BR89 SWIM-type domain-containing protein

1.4e-42

84.69

Show/hide

Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKI TY ACYAPQFQPV HEDYWITPTSMPVL  DP LLRK GR KSSRYHNEMDW E SAQQRCSFC QLGHNR +CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

A0A5D3D607 Uncharacterized protein

2.5e-44

86.73

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Query:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS
        MNYEDF+EDYYKISTY ACYAPQFQPV HEDYWITPTSMPVL PDP LLRK GRPK+SRYHNEMDW E SAQQRCSF  QLGHNRR CTLL RQAPDS
Subjt:  MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAACTACGAAGACTTCATTGAGGATTACTATAAAATTTCAACTTACGCTGCATGTTACGCACCTCAATTTCAACCTGTACTGCATGAAGATTATTGGATCACGCCCAC
AAGTATGCCTGTCTTACGTCCAGATCCGCGGTTGTTGAGGAAACCAGGTAGACCAAAAAGTTCACGCTATCACAACGAGATGGATTGGGCAGAACCAAGTGCTCAACAAC
GATGCTCGTTTTGTGGTCAACTTGGTCACAACCGACGAAAGTGTACTTTGTTATTGAGACAGGCACCTGATAGTTAG

mRNA sequence

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Protein sequence

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MNYEDFIEDYYKISTYAACYAPQFQPVLHEDYWITPTSMPVLRPDPRLLRKPGRPKSSRYHNEMDWAEPSAQQRCSFCGQLGHNRRKCTLLLRQAPDS

PI0019898 (gene) of Melon (PI 482460) v1 genome