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PI0019937 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019937
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGeranylgeranyl transferase type-2 subunit beta
Genome locationchr01:3048697..3049208
RNA-Seq ExpressionPI0019937
SyntenyPI0019937
Gene Ontology termsGO:0018344 - protein geranylgeranylation (biological process)
GO:0005968 - Rab-protein geranylgeranyltransferase complex (cellular component)
GO:0004663 - Rab geranylgeranyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001330 - PFTB repeat
IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR045089 - Prenyltransferase subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB61345.1 Geranylgeranyl transferase type-2 subunit beta [Morus notabilis]1.1e-3688.76Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL
        VCYSWWVLSSLI+IDRV WINKEKL+KFILDCQ DTENGGISD + DDAVD+YHT FG+AGLSLLEYPGLKAIDPAYALPVDVVNRIFL
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL

XP_022153059.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Momordica charantia]4.9e-3786.32Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSKNSII
        VCYSWWVLSSLI+IDRV WINKEKLI+FILDCQ DTENGGISD + DDAVD+YHT FGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL K   I
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSKNSII

XP_022153066.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Momordica charantia]4.9e-3786.32Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSKNSII
        VCYSWWVLSSLI+IDRV WINKEKLI+FILDCQ DTENGGISD + DDAVD+YHT FGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL K   I
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSKNSII

XP_024020872.1 geranylgeranyl transferase type-2 subunit beta 1 isoform X1 [Morus notabilis]1.1e-3688.76Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL
        VCYSWWVLSSLI+IDRV WINKEKL+KFILDCQ DTENGGISD + DDAVD+YHT FG+AGLSLLEYPGLKAIDPAYALPVDVVNRIFL
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL

XP_024020874.1 geranylgeranyl transferase type-2 subunit beta 1 isoform X2 [Morus notabilis]1.1e-3688.76Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL
        VCYSWWVLSSLI+IDRV WINKEKL+KFILDCQ DTENGGISD + DDAVD+YHT FG+AGLSLLEYPGLKAIDPAYALPVDVVNRIFL
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL

TrEMBL top hitse value%identityAlignment
A0A6J1DHW7 Geranylgeranyl transferase type-2 subunit beta2.4e-3786.32Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSKNSII
        VCYSWWVLSSLI+IDRV WINKEKLI+FILDCQ DTENGGISD + DDAVD+YHT FGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL K   I
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSKNSII

A0A6J1DJK5 Geranylgeranyl transferase type-2 subunit beta2.4e-3786.32Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSKNSII
        VCYSWWVLSSLI+IDRV WINKEKLI+FILDCQ DTENGGISD + DDAVD+YHT FGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL K   I
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSKNSII

A0A7J6E4X9 Geranylgeranyl transferase type-2 subunit beta9.0e-3786.81Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK
        VCYSWWVLSSLI+IDRV WINKEKL+KFILDCQ D ENGGISD + DDAVD+YHT FG+AGLSLLEYPGLKAIDPAYALPVDVVNRIFL K
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK

A0A7J6FEP7 Geranylgeranyl transferase type-2 subunit beta9.0e-3786.81Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK
        VCYSWWVLSSLI+IDRV WINKEKL+KFILDCQ D ENGGISD + DDAVD+YHT FG+AGLSLLEYPGLKAIDPAYALPVDVVNRIFL K
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK

W9QZF2 Geranylgeranyl transferase type-2 subunit beta5.3e-3788.76Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL
        VCYSWWVLSSLI+IDRV WINKEKL+KFILDCQ DTENGGISD + DDAVD+YHT FG+AGLSLLEYPGLKAIDPAYALPVDVVNRIFL
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL

SwissProt top hitse value%identityAlignment
O93830 Geranylgeranyl transferase type-2 subunit beta1.5e-2054.55Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYP--GLKAIDPAYALPVDVVNR
        VCYSWWVLSSL ++ R  W++ + L  FIL CQ D ENGG SD +  +  D+YHTCF IAGLSL++Y   G K IDP Y +PV+V ++
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYP--GLKAIDPAYALPVDVVNR

P20133 Geranylgeranyl transferase type-2 subunit beta7.9e-2256.98Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNR
        VCYSWWVLSSL +I R+ WIN EKL +FIL CQ D + GGISD + ++ VD++HT FG+AGLSL+ Y  L  IDP Y +P  V ++
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNR

P46960 Geranylgeranyl transferase type-2 subunit beta4.3e-2046.59Show/hide
Query:  CYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL
        CY WW LS L +I ++ WI++ +LI F+L  Q D ++GG +D K +DA D+YHTCF +AGLSLL++P ++ +DP + LP++V  ++ L
Subjt:  CYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFL

Q84J75 Geranylgeranyl transferase type-2 subunit beta 16.2e-3578.02Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK
        VCYSWWVLSSLI+IDRV WI+K KL+KFILDCQ D +NGGISD + +DAVDI+HT FG+AGLSLLEYPG+K IDPAYALPVDVVNRI  +K
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK

Q9LHL5 Geranylgeranyl transferase type-2 subunit beta 25.5e-3172.53Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK
        VCYSWWVLSSLI+IDRV WI K KL+KFILD Q D +NGGISD +    VDI+HT FG+AGLSLLEYPG+K IDPAYALPV V+NRI  +K
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK

Arabidopsis top hitse value%identityAlignment
AT3G12070.1 RAB geranylgeranyl transferase beta subunit 23.9e-3272.53Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK
        VCYSWWVLSSLI+IDRV WI K KL+KFILD Q D +NGGISD +    VDI+HT FG+AGLSLLEYPG+K IDPAYALPV V+NRI  +K
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK

AT3G12070.2 RAB geranylgeranyl transferase beta subunit 23.9e-3272.53Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK
        VCYSWWVLSSLI+IDRV WI K KL+KFILD Q D +NGGISD +    VDI+HT FG+AGLSLLEYPG+K IDPAYALPV V+NRI  +K
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK

AT5G12210.1 RAB geranylgeranyl transferase beta subunit 14.4e-3678.02Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK
        VCYSWWVLSSLI+IDRV WI+K KL+KFILDCQ D +NGGISD + +DAVDI+HT FG+AGLSLLEYPG+K IDPAYALPVDVVNRI  +K
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK

AT5G12210.2 RAB geranylgeranyl transferase beta subunit 14.4e-3678.02Show/hide
Query:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK
        VCYSWWVLSSLI+IDRV WI+K KL+KFILDCQ D +NGGISD + +DAVDI+HT FG+AGLSLLEYPG+K IDPAYALPVDVVNRI  +K
Subjt:  VCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTTCAGGTTTGCTACTCATGGTGGGTTCTTTCGAGCTTGATCGTGATTGACAGAGTTCCCTGGATTAATAAGGAAAAACTTATTAAGTTCATCTTAGACTGTCA
GTTTGACACAGAAAATGGTGGTATTTCAGATGAAAAAGCGGATGATGCTGTTGATATCTACCACACATGCTTTGGAATAGCTGGCCTTTCACTTCTTGAATATCCCGGAC
TGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAATAGTATCATCCAATGCTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTTCAGGTTTGCTACTCATGGTGGGTTCTTTCGAGCTTGATCGTGATTGACAGAGTTCCCTGGATTAATAAGGAAAAACTTATTAAGTTCATCTTAGACTGTCA
GTTTGACACAGAAAATGGTGGTATTTCAGATGAAAAAGCGGATGATGCTGTTGATATCTACCACACATGCTTTGGAATAGCTGGCCTTTCACTTCTTGAATATCCCGGAC
TGAAAGCCATTGATCCAGCTTATGCTTTACCAGTTGACGTTGTGAACAGAATTTTCTTGAGCAAAAATAGTATCATCCAATGCTATTGA
Protein sequenceShow/hide protein sequence
MFLQVCYSWWVLSSLIVIDRVPWINKEKLIKFILDCQFDTENGGISDEKADDAVDIYHTCFGIAGLSLLEYPGLKAIDPAYALPVDVVNRIFLSKNSIIQCY