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PI0019939 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0019939
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr01:17579623..17579877
RNA-Seq ExpressionPI0019939
SyntenyPI0019939
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]7.6e-2878.57Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS
        MCD +D  VG M GQKK+KV  PIYYA KTL + +ENYTTIE +LLAIVFAIEKFRSYIVGSKVT+HSDHSAIR+LMAKKDAKS
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS

KAD2805612.1 hypothetical protein E3N88_38989 [Mikania micrantha]3.6e-2572.29Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK
        MCDV+D AVGA+LGQ++ K  HPIYYASKTL D QENYTT E +LLA+VFA +KFRSY+V SK TV +DHSA+RFL AKKDAK
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK

TYK26567.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]7.6e-2878.57Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS
        MCD +D  VG M GQKK+KV  PIYYA KTL + +ENYTTIE +LLAIVFAIEKFRSYIVGSKVT+HSDHSAIR+LMAKKDAKS
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS

WP_217833163.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Synechococcus sp. PCC 7002]2.7e-2567.47Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK
        MCD ++  VGA+LGQ+K K++HPIYYASKTL   QENYTT E ++LAIVFA++KFR+Y +GSKVT++SDHSAI++LM KKDAK
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK

XP_022152366.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia]2.1e-2567.47Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK
        MCD +D A+GAMLGQ+KNK++HP+YYASKTLT  Q NYTT E +LLA+VFA +KFRSY++G+KV V +DHSA+++L AKKDAK
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK

TrEMBL top hitse value%identityAlignment
A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.63.7e-2878.57Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS
        MCD +D  VG M GQKK+KV  PIYYA KTL + +ENYTTIE +LLAIVFAIEKFRSYIVGSKVT+HSDHSAIR+LMAKKDAKS
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS

A0A5A7V8R9 RT_RNaseH domain-containing protein2.9e-2571.08Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK
        MCD +D  +GAMLGQK +KVI+PIY  SKTL + QENYTT E +LLA+VFAIEK+ SYIVGSKVT+HSDH AIR+LM KKDA+
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.63.7e-2878.57Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS
        MCD +D  VG M GQKK+KV  PIYYA KTL + +ENYTTIE +LLAIVFAIEKFRSYIVGSKVT+HSDHSAIR+LMAKKDAKS
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS

A0A5N6LY35 Integrase catalytic domain-containing protein1.7e-2572.29Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK
        MCDV+D AVGA+LGQ++ K  HPIYYASKTL D QENYTT E +LLA+VFA +KFRSY+V SK TV +DHSA+RFL AKKDAK
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK

A0A6J1DHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110201101.0e-2567.47Show/hide
Query:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK
        MCD +D A+GAMLGQ+KNK++HP+YYASKTLT  Q NYTT E +LLA+VFA +KFRSY++G+KV V +DHSA+++L AKKDAK
Subjt:  MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.8e-1142.68Show/hide
Query:  DVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS
        D +D A+GA+L Q      HP+ Y S+TL + + NY+TIE +LLAIV+A + FR Y++G    + SDH  + +L   KD  S
Subjt:  DVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS

P10394 Retrovirus-related Pol polyprotein from transposon 4125.9e-0739.53Show/hide
Query:  CDVTDA---AVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS
        C  TDA   A GA+L Q  N    P+ YAS+  T  + N +T E +L AI +AI  FR YI G   TV +DH  + +L +  +  S
Subjt:  CDVTDA---AVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.9e-0632.53Show/hide
Query:  DVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSK-VTVHSDHSAIRFLMAKKDAKS
        D + + +GA+L Q+      PI   S+TL   ++NY T E +LLAIV+A+ K ++++ GS+ + + +DH  + F +A ++  +
Subjt:  DVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSK-VTVHSDHSAIRFLMAKKDAKS

P20825 Retrovirus-related Pol polyprotein from transposon 2971.7e-0941.77Show/hide
Query:  DVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKD
        D ++ A+GA+L Q      HPI + S+TL D + NY+ IE +LLAIV+A + FR Y++G +  + SDH  +R+L   K+
Subjt:  DVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKD

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.4e-0833.75Show/hide
Query:  DVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGS-KVTVHSDHSAIRFLMAKKD
        D ++ A+GA+L Q       PI Y S++L   +ENY TIE ++LAI+++++  R+Y+ G+  + V++DH  + F +  ++
Subjt:  DVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGS-KVTVHSDHSAIRFLMAKKD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGACGTGACTGATGCGGCGGTAGGGGCTATGCTGGGTCAAAAGAAAAACAAAGTGATCCACCCTATATACTATGCGAGCAAGACTCTCACGGACGTTCAAGAGAA
CTACACTACCATAGAGAATAAGCTGCTTGCGATAGTATTTGCAATAGAAAAATTTAGGAGTTACATAGTTGGCTCCAAAGTTACGGTACATTCTGATCATTCTGCGATCA
GATTCCTTATGGCGAAGAAGGACGCCAAATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGACGTGACTGATGCGGCGGTAGGGGCTATGCTGGGTCAAAAGAAAAACAAAGTGATCCACCCTATATACTATGCGAGCAAGACTCTCACGGACGTTCAAGAGAA
CTACACTACCATAGAGAATAAGCTGCTTGCGATAGTATTTGCAATAGAAAAATTTAGGAGTTACATAGTTGGCTCCAAAGTTACGGTACATTCTGATCATTCTGCGATCA
GATTCCTTATGGCGAAGAAGGACGCCAAATCGTGA
Protein sequenceShow/hide protein sequence
MCDVTDAAVGAMLGQKKNKVIHPIYYASKTLTDVQENYTTIENKLLAIVFAIEKFRSYIVGSKVTVHSDHSAIRFLMAKKDAKS