; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0020016 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020016
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionStructure-specific endonuclease subunit SLX1 homolog
Genome locationchr12:24590250..24592361
RNA-Seq ExpressionPI0020016
SyntenyPI0020016
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0051569 - regulation of histone H3-K4 methylation (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR027520 - Structure-specific endonuclease subunit Slx1
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060004.1 Structure-specific endonuclease subunit SLX1 [Cucumis melo var. makuwa]6.3e-21395.08Show/hide
Query:  AVLQDEEKE-DHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNE
        AV+QDEEKE D EEEERGN VNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNE
Subjt:  AVLQDEEKE-DHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNE

Query:  SLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREHEEICSF
        SLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQGVLENEDDWEY+RE EEICSF
Subjt:  SLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREHEEICSF

Query:  RVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVAGTSRTEIIIDDGE
        +VYGSMKEVSNEVPQKLMDYQTGTDGR P VLRGCDKELETNEQVPPSSCTPSY DV MSYDLCACDEGLE DEREAASCGQSC VAGTSRTEIIIDDGE
Subjt:  RVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVAGTSRTEIIIDDGE

Query:  ENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        ENQ EGSGMNLQEQPGRKNLTSGI SEISKVSRC+N  VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  ENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

KGN66284.2 hypothetical protein Csa_023148 [Cucumis sativus]8.5e-18693.9Show/hide
Query:  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNY
        I  +VNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNY
Subjt:  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNY

Query:  FSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETN
        FSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQ +LENE DWEYNRE EEIC FRVYGSMKEVSNEVPQKLMDYQTGTDGR PHVLRGCDKELETN
Subjt:  FSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETN

Query:  EQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVAGTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTV
        EQVPPSSCTPSY DV MSYDLCACDEGLE DEREAASCGQSCIVAGTSRTEI+IDD EENQLEGS MNLQEQPGR+NLTSGI SEISKVSR NN  VPTV
Subjt:  EQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVAGTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTV

Query:  EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

XP_004153269.1 structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus]7.9e-21693.98Show/hide
Query:  MRKRKEKPEICKTMAVLQDEEKEDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS
        MRKRKEKPEICKT     DEEKED EEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS
Subjt:  MRKRKEKPEICKTMAVLQDEEKEDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS

Query:  ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDD
        ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQ +LENE D
Subjt:  ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDD

Query:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVA
        WEYNRE EEIC FRVYGSMKEVSNEVPQKLMDYQTGTDGR PHVLRGCDKELETNEQVPPSSCTPSY DV MSYDLCACDEGLE DEREAASCGQSCIVA
Subjt:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVA

Query:  GTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        GTSRTEI+IDD EENQLEGS MNLQEQPGR+NLTSGI SEISKVSR NN  VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  GTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

XP_008457313.1 PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]2.0e-21995.01Show/hide
Query:  MRKRKEKPEICKTM-AVLQDEEKE-DHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKEKPEICKTM AV+QDEEKE D EEEERGN VNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKPEICKTM-AVLQDEEKE-DHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQGVLENE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENE

Query:  DDWEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCI
        DDWEY+RE EEICSF+VYGSMKEVSNEVPQKLMDYQTGTDGR P VLRGCDKELETNEQVPPSSCTPSY DV MSYDLCACDEGLE DEREAASCGQSC 
Subjt:  DDWEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCI

Query:  VAGTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
        VAGTSRTEIIIDDGEENQ EGSGMNLQEQPGRKNLTSGI SEISKVSRC+N  VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
Subjt:  VAGTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ

Query:  L
        L
Subjt:  L

XP_038894793.1 structure-specific endonuclease subunit SLX1 [Benincasa hispida]1.1e-19384.79Show/hide
Query:  MRKRKEKPEICKTMAVLQDEEK--EDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKE+PEI KTMAV ++E++  ED EEEE  NEVNGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKPEICKTMAVLQDEEK--EDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+MKNAAGCPSLP+HMKVQVSPINELPCYSEGDQ VLENE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENE

Query:  DDWEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCI
        DDWEYNRE EEICSFRVYGSMKEVSNEVPQKLMD+Q  TDGR P  L GCDKE E NEQVPPSSC PSY D  MSYDL  CDE LE DERE ASC  SCI
Subjt:  DDWEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCI

Query:  VAGTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
        V   SRTEIIIDDG+E+Q+EG+GMNL++Q  RKNL+SGI SEISKVSRC N ++P VEYEVIDVSTPSPDCRT+SHR KR+VTSG+SE+IDLTKSPTFIQ
Subjt:  VAGTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ

Query:  L
        L
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A0A0M0Y6 Structure-specific endonuclease subunit SLX1 homolog3.8e-21693.98Show/hide
Query:  MRKRKEKPEICKTMAVLQDEEKEDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS
        MRKRKEKPEICKT     DEEKED EEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS
Subjt:  MRKRKEKPEICKTMAVLQDEEKEDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS

Query:  ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDD
        ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQ +LENE D
Subjt:  ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDD

Query:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVA
        WEYNRE EEIC FRVYGSMKEVSNEVPQKLMDYQTGTDGR PHVLRGCDKELETNEQVPPSSCTPSY DV MSYDLCACDEGLE DEREAASCGQSCIVA
Subjt:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVA

Query:  GTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        GTSRTEI+IDD EENQLEGS MNLQEQPGR+NLTSGI SEISKVSR NN  VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  GTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

A0A1S3C574 Structure-specific endonuclease subunit SLX1 homolog9.7e-22095.01Show/hide
Query:  MRKRKEKPEICKTM-AVLQDEEKE-DHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKEKPEICKTM AV+QDEEKE D EEEERGN VNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKPEICKTM-AVLQDEEKE-DHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQGVLENE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENE

Query:  DDWEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCI
        DDWEY+RE EEICSF+VYGSMKEVSNEVPQKLMDYQTGTDGR P VLRGCDKELETNEQVPPSSCTPSY DV MSYDLCACDEGLE DEREAASCGQSC 
Subjt:  DDWEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCI

Query:  VAGTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
        VAGTSRTEIIIDDGEENQ EGSGMNLQEQPGRKNLTSGI SEISKVSRC+N  VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
Subjt:  VAGTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ

Query:  L
        L
Subjt:  L

A0A5D3BBR0 Structure-specific endonuclease subunit SLX1 homolog3.0e-21395.08Show/hide
Query:  AVLQDEEKE-DHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNE
        AV+QDEEKE D EEEERGN VNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNE
Subjt:  AVLQDEEKE-DHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNE

Query:  SLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREHEEICSF
        SLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQGVLENEDDWEY+RE EEICSF
Subjt:  SLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREHEEICSF

Query:  RVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVAGTSRTEIIIDDGE
        +VYGSMKEVSNEVPQKLMDYQTGTDGR P VLRGCDKELETNEQVPPSSCTPSY DV MSYDLCACDEGLE DEREAASCGQSC VAGTSRTEIIIDDGE
Subjt:  RVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVAGTSRTEIIIDDGE

Query:  ENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        ENQ EGSGMNLQEQPGRKNLTSGI SEISKVSRC+N  VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  ENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

A0A6J1HZQ2 Structure-specific endonuclease subunit SLX1 homolog4.3e-16778.68Show/hide
Query:  MRKRKEKPEICKTMAVLQDEEKEDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS
        MR+RKEKPEI KTMAV  +E+KED E+EERGNE NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVS
Subjt:  MRKRKEKPEICKTMAVLQDEEKEDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS

Query:  ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDD
        ALQFEWAWQHPNESLAVRSAAATFKSLSG+ANK+KLAYTMLTLPAWC LNITVNYFSTK+M NAAGCPSLP HM+VQ+SPI+ELPCYSEGD+ VLENE+D
Subjt:  ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDD

Query:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVA
        WEYN+E+EE+CS +V+G M EV NE+PQ LMDY TGTDGR PH LRG D+EL+ NEQVP SSCTPSY DV +SYDL  C      DE+E A C Q C V 
Subjt:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVA

Query:  GTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRV
        G   TEIIIDDGEENQLEGSGM LQ+QPGRK   SGI +EISKVS      +P VEYEVIDVSTPSP CRTSSH+FKRR+
Subjt:  GTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRV

A0A6J1I681 Structure-specific endonuclease subunit SLX1 homolog4.3e-16778.68Show/hide
Query:  MRKRKEKPEICKTMAVLQDEEKEDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS
        MR+RKEKPEI KTMAV  +E+KED E+EERGNE NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVS
Subjt:  MRKRKEKPEICKTMAVLQDEEKEDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVS

Query:  ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDD
        ALQFEWAWQHPNESLAVRSAAATFKSLSG+ANK+KLAYTMLTLPAWC LNITVNYFSTK+M NAAGCPSLP HM+VQ+SPI+ELPCYSEGD+ VLENE+D
Subjt:  ALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDD

Query:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVA
        WEYN+E+EE+CS +V+G M EV NE+PQ LMDY TGTDGR PH LRG D+EL+ NEQVP SSCTPSY DV +SYDL  C      DE+E A C Q C V 
Subjt:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVA

Query:  GTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRV
        G   TEIIIDDGEENQLEGSGM LQ+QPGRK   SGI +EISKVS      +P VEYEVIDVSTPSP CRTSSH+FKRR+
Subjt:  GTSRTEIIIDDGEENQLEGSGMNLQEQPGRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRV

SwissProt top hitse value%identityAlignment
A7STV9 Structure-specific endonuclease subunit SLX1 homolog5.4e-2637.43Show/hide
Query:  NGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLS-GVAN
        +GF   YLL    P+FKGHTYIG+TVNP RRI+QHNG + + GA++T RK+PW M+L ++GFP ++ ALQFEWAWQ P  S  ++SAA   K     V  
Subjt:  NGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLS-GVAN

Query:  KVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREHEEIC
          ++   +L +  W  L + + +   ++          P HM V   P+       +  Q  + +ED      +H+E C
Subjt:  KVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREHEEIC

Q0IH86 Structure-specific endonuclease subunit slx18.4e-2738.31Show/hide
Query:  EVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVA
        EV GF+  YLL    P++KG  YIGFTVNP+RRI+QHN G+ + GAW+T  + PW+MVL ++GFP +++AL+FEWAWQHP+ S  +       K  S   
Subjt:  EVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVA

Query:  NKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELP
          + +   ML +  W  L +T+ +   ++ +        P HM +    +   P
Subjt:  NKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELP

Q32PI0 Structure-specific endonuclease subunit SLX14.5e-2842.07Show/hide
Query:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR +G  Y+GFTVNP RR++QHN G  + GAWRT  + PWEMVL ++GFP+ V+AL+FEWAWQHP  S  +       +  +  A  ++
Subjt:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSP
        +   ML  P W  L +T+ +    F ++   CP  P HM +   P
Subjt:  LAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSP

Q5PQP5 Structure-specific endonuclease subunit SLX13.1e-2940.74Show/hide
Query:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL ++GFP+ V+AL+FEWAWQHP  S  +       +S +     ++
Subjt:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSP------INELPCYSEGD
        +   ML +P W  L +TV +    F      CP+ P HM +   P      + + P  SE D
Subjt:  LAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSP------INELPCYSEGD

Q8BX32 Structure-specific endonuclease subunit SLX11.1e-2941.36Show/hide
Query:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL I+GFP+ V+AL+FEWAWQHP  S  +       +S +  A  ++
Subjt:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSP------INELPCYSEGD
        +   ML +P W  L +T+ +    F      CP+ P HM +   P      + + P  SE D
Subjt:  LAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSP------INELPCYSEGD

Arabidopsis top hitse value%identityAlignment
AT2G30350.1 Excinuclease ABC, C subunit, N-terminal1.6e-3335.83Show/hide
Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSE-GDQGVLENEDD
        LQFEWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW  LN+TVNYFS+K+  +    PSLP HMKVQV  + +L  +++  D    E+E+ 
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSE-GDQGVLENEDD

Query:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLE-IDEREAASCGQSCIV
         E N E ++           + S+ + Q      + +D R  H  +  +     +E+                 D  A   G   +DE E      S I 
Subjt:  WEYNREHEEICSFRVYGSMKEVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLE-IDEREAASCGQSCIV

Query:  AGTSRT-----EIIIDDGEENQLEGSGMNLQEQP---GRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLT
         G+ R      E + +D   +      + + E     G    T  +  E  K      +    V+ EVID+ TPSP CR  S   +RRV    SE IDLT
Subjt:  AGTSRT-----EIIIDDGEENQLEGSGMNLQEQP---GRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLT

Query:  KSPTFIQ
         SP FI+
Subjt:  KSPTFIQ

AT2G30350.2 Excinuclease ABC, C subunit, N-terminal2.6e-7143.86Show/hide
Query:  EEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFK
        E+   G +  GFF+CYLL S  PR KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRPWEMVLCIYGFPTNVSALQFEWAWQHP ES+AVR AAA FK
Subjt:  EEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFK

Query:  SLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSE-GDQGVLENEDDWEYNREHEEICSFRVYGSMKEVSN
        S SGVA+K+KL YTML LPAW  LN+TVNYFS+K+  +    PSLP HMKVQV  + +L  +++  D    E+E+  E N E ++           + S+
Subjt:  SLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSE-GDQGVLENEDDWEYNREHEEICSFRVYGSMKEVSN

Query:  EVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLE-IDEREAASCGQSCIVAGTSRT-----EIIIDDGEENQLE
         + Q      + +D R  H  +  +     +E+                 D  A   G   +DE E      S I  G+ R      E + +D   +   
Subjt:  EVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLE-IDEREAASCGQSCIVAGTSRT-----EIIIDDGEENQLE

Query:  GSGMNLQEQP---GRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
           + + E     G    T  +  E  K      +    V+ EVID+ TPSP CR  S   +RRV    SE IDLT SP FI+
Subjt:  GSGMNLQEQP---GRKNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal4.0e-0841.67Show/hide
Query:  FSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQ
        +S YL+ S     K  TY+G T +  RR++QHNGEIR GA  +   RPW     I GF     A  FE  W+
Subjt:  FSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCATGGCTGTACTACAGGATGAGGAGAAGGAAGACCATGAAGAAGAAGAAAGGGGAAACGAAGTGAATGGCTT
CTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCGAAACGCAGAATCAGACAACACAATGGTGAAATTA
GATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTCTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCAT
CCTAATGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGTG
TGGTTTAAATATAACTGTAAACTACTTCTCAACAAAGTTCATGAAGAACGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGC
TTCCATGCTATTCAGAAGGAGATCAAGGTGTGCTTGAAAATGAAGATGATTGGGAGTATAATAGAGAACATGAAGAAATTTGTAGTTTTCGAGTATATGGATCGATGAAA
GAAGTTTCGAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGAACAGATGGAAGAGCTCCTCACGTGTTGCGTGGATGTGATAAAGAGCTCGAGACCAATGAACA
AGTGCCACCTTCTTCGTGTACTCCGTCTTATACTGATGTGAGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGATTGATGAAAGAGAGGCAGCTTCGTGTG
GTCAGTCTTGCATTGTAGCAGGTACGTCTAGGACTGAAATTATCATTGATGACGGAGAGGAAAACCAATTAGAAGGGAGTGGTATGAACTTGCAGGAGCAACCAGGTAGG
AAGAATTTAACATCAGGAATAACTTCTGAAATCAGCAAAGTTTCAAGGTGTAATAATGCCCAGGTTCCGACTGTTGAGTATGAGGTAATCGATGTGTCTACCCCGTCTCC
CGACTGCCGAACAAGTTCTCATAGATTCAAGAGAAGGGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATCCAATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCATGGCTGTACTACAGGATGAGGAGAAGGAAGACCATGAAGAAGAAGAAAGGGGAAACGAAGTGAATGGCTT
CTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCGAAACGCAGAATCAGACAACACAATGGTGAAATTA
GATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTCTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCAT
CCTAATGAGTCATTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGTG
TGGTTTAAATATAACTGTAAACTACTTCTCAACAAAGTTCATGAAGAACGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGC
TTCCATGCTATTCAGAAGGAGATCAAGGTGTGCTTGAAAATGAAGATGATTGGGAGTATAATAGAGAACATGAAGAAATTTGTAGTTTTCGAGTATATGGATCGATGAAA
GAAGTTTCGAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGAACAGATGGAAGAGCTCCTCACGTGTTGCGTGGATGTGATAAAGAGCTCGAGACCAATGAACA
AGTGCCACCTTCTTCGTGTACTCCGTCTTATACTGATGTGAGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGATTGATGAAAGAGAGGCAGCTTCGTGTG
GTCAGTCTTGCATTGTAGCAGGTACGTCTAGGACTGAAATTATCATTGATGACGGAGAGGAAAACCAATTAGAAGGGAGTGGTATGAACTTGCAGGAGCAACCAGGTAGG
AAGAATTTAACATCAGGAATAACTTCTGAAATCAGCAAAGTTTCAAGGTGTAATAATGCCCAGGTTCCGACTGTTGAGTATGAGGTAATCGATGTGTCTACCCCGTCTCC
CGACTGCCGAACAAGTTCTCATAGATTCAAGAGAAGGGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATCCAATTGTAG
Protein sequenceShow/hide protein sequence
MRKRKEKPEICKTMAVLQDEEKEDHEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQH
PNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCGLNITVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQGVLENEDDWEYNREHEEICSFRVYGSMK
EVSNEVPQKLMDYQTGTDGRAPHVLRGCDKELETNEQVPPSSCTPSYTDVSMSYDLCACDEGLEIDEREAASCGQSCIVAGTSRTEIIIDDGEENQLEGSGMNLQEQPGR
KNLTSGITSEISKVSRCNNAQVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL