; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0020035 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020035
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description60S ribosomal protein L27
Genome locationchr02:3501464..3504558
RNA-Seq ExpressionPI0020035
SyntenyPI0020035
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR001141 - Ribosomal protein L27e
IPR005824 - KOW
IPR008991 - Translation protein SH3-like domain superfamily
IPR038655 - Ribosomal protein L27e superfamily
IPR041991 - Eukaryotic Ribosomal Protein L27, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145994.3 60S ribosomal protein L27-3 [Cucumis sativus]8.8e-5085.83Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK               +KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK SKVAASKEIKKRLEDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

XP_008464678.1 PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo]6.7e-5086.61Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK               +KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK SKVAASKEIKKRLEDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

XP_022940098.1 60S ribosomal protein L27-3-like [Cucurbita moschata]2.0e-4985.83Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMK                KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK SKVAASKEIKKRLEDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

XP_022981139.1 60S ribosomal protein L27-like [Cucurbita maxima]1.2e-4985.04Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMK                KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVN DCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSKGSKVAA+KEIKKRLEDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

XP_038899503.1 60S ribosomal protein L27-3-like [Benincasa hispida]2.0e-4985.04Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYG+CLVAGMK                KKSRVKAFIKLVNYQH+MPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSKGSKVAASKEIKKR EDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

TrEMBL top hitse value%identityAlignment
A0A0A0L310 60S ribosomal protein L272.1e-4985.04Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK               +KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK SKVAASKEIKKRLEDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

A0A1S3CNL3 60S ribosomal protein L273.3e-5086.61Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK               +KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK SKVAASKEIKKRLEDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

A0A5A7SSA5 60S ribosomal protein L273.3e-5086.61Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK               +KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK SKVAASKEIKKRLEDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

A0A6J1FNC2 60S ribosomal protein L279.5e-5085.83Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMK                KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK SKVAASKEIKKRLEDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

A0A6J1J143 60S ribosomal protein L275.6e-5085.04Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMK                KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVN DCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSKGSKVAA+KEIKKRLEDRFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

SwissProt top hitse value%identityAlignment
P41101 60S ribosomal protein L271.8e-3766.41Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDL----KDVVN
        M KF+KPNKAVI+LQG++AGRKAVIVR FDEGTRDRPYGHCLVAG+                 KKSRVKAFIKLVNY HIMPTRYTLD DL    KDVVN
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMK---------------NKKSRVKAFIKLVNYQHIMPTRYTLDVDL----KDVVN

Query:  VDCLQSKGSKVAASKEIKKRLEDRFKTGKNR
         D LQ++  KV A +  K RL +RFKTGKNR
Subjt:  VDCLQSKGSKVAASKEIKKRLEDRFKTGKNR

P51419 60S ribosomal protein L27-32.0e-4167.72Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+K                KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK  KVAA KE K +LE+RFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

Q05462 60S ribosomal protein L277.0e-4269.29Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+KPNKAVI+LQGR+AG+KAVIV+ FD+GTR++PYGHCLVAG+K                KKSRVKAF+KLVNYQH+MPTRYTLDVDLKD V  D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK  KV A KE KK LE+RFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

Q8LCL3 60S ribosomal protein L27-22.5e-3965.35Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+K                KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        +SK  KV A KE K +LE+RFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

Q9SKX8 60S ribosomal protein L27-11.3e-3559.06Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVK +KP KAVI+LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+K                KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D +
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
         SK  KV A KE K + E+RFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

Arabidopsis top hitse value%identityAlignment
AT2G32220.1 Ribosomal L27e protein family9.1e-3759.06Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVK +KP KAVI+LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+K                KKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D +
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
         SK  KV A KE K + E+RFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

AT3G22230.1 Ribosomal L27e protein family1.8e-4065.35Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+K                KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        +SK  KV A KE K +LE+RFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

AT4G15000.1 Ribosomal L27e protein family1.5e-4267.72Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+K                KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKTGKNR
        QSK  KVAA KE K +LE+RFKTGKNR
Subjt:  QSKGSKVAASKEIKKRLEDRFKTGKNR

AT4G15000.2 Ribosomal L27e protein family2.3e-4066.67Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+K                KKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKN---------------KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKGSKVAASKEIKKRLEDRFKT
        QSK  KVAA KE K +LE+RFKT
Subjt:  QSKGSKVAASKEIKKRLEDRFKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAATTCATCAAGCCGAATAAAGCTGTTATTGTTCTTCAAGGCCGATTTGCCGGCCGGAAAGCTGTCATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCC
CTACGGCCATTGTTTGGTAGCAGGGATGAAAAACAAAAAATCGAGAGTGAAGGCGTTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTGGACG
TTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAAAGGGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAG
AATAGGAGGAAGTATCACACAACCAGATCCTATAACAGGTTTGGCAATAAAGGCAACAATCTGAAACAAACAAAGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAATTCATCAAGCCGAATAAAGCTGTTATTGTTCTTCAAGGCCGATTTGCCGGCCGGAAAGCTGTCATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGGCC
CTACGGCCATTGTTTGGTAGCAGGGATGAAAAACAAAAAATCGAGAGTGAAGGCGTTCATCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTGGACG
TTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAAAGGGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAG
AATAGGAGGAAGTATCACACAACCAGATCCTATAACAGGTTTGGCAATAAAGGCAACAATCTGAAACAAACAAAGGCTTGA
Protein sequenceShow/hide protein sequence
MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKNKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDRFKTGK
NRRKYHTTRSYNRFGNKGNNLKQTKA