CuGenDBv2

Gene ID	PI0020038
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr09:11090449..11091568
RNA-Seq Expression	PI0020038
Synteny	PI0020038
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033985.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.7e-51

47.6

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Query:  PWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRWQQIKSNLPNIQINGKL
        PW  I K  DWFESKI W +N+G + SFWRSNW +  PLS   P  +AL+  +NA++K+ WD +S   N  PRRP NDRE + WQ IK +LP I  +   
Subjt:  PWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRWQQIKSNLPNIQINGKL

Query:  SKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCVLCKNQNEDLNHLFRNC
         KP W+   NN+++++S K     +       ++E    K+LWRS I +KCKFFIWT+IH+K+NTMDNIQK+  + CL+P+WC+ C++ NED+NHLF + 
Subjt:  SKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCVLCKNQNEDLNHLFRNC

Query:  EKAATLWE
         KA  LW+
Subjt:  EKAATLWE

KAA0045532.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.5e-50

43.5

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Query:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW
        H G + ++ +  S  +PW  I K  DW+ESKI+W  N+G + SFW S W +  PLS   PR +AL+  ++A++K+ WD  S D N  PRRP N+RE + W
Subjt:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW

Query:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV
          IK +LP I  N  + KP W    +  ++++S K    ++       ++E    K+LWRS IP+KCKFFIWT++H+K+NTMDNIQK+  +  L+PSWC+
Subjt:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV

Query:  LCKNQNEDLNHLFRNCEKAATLW
         C++ NED+NHLF  C  A +LW
Subjt:  LCKNQNEDLNHLFRNCEKAATLW

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.5e-50

43.5

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Query:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW
        H G + ++ +  S  +PW  I K  DW+ESKI+W  N+G + SFW S W +  PLS   PR +AL+  ++A++K+ WD  S D N  PRRP N+RE + W
Subjt:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW

Query:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV
          IK +LP I  N  + KP W    +  ++++S K    ++       ++E    K+LWRS IP+KCKFFIWT++H+K+NTMDNIQK+  +  L+PSWC+
Subjt:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV

Query:  LCKNQNEDLNHLFRNCEKAATLW
         C++ NED+NHLF  C  A +LW
Subjt:  LCKNQNEDLNHLFRNCEKAATLW

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.5e-50

43.5

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Query:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW
        H G + ++ +  S  +PW  I K  DW+ESKI+W  N+G + SFW S W +  PLS   PR +AL+  ++A++K+ WD  S D N  PRRP N+RE + W
Subjt:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW

Query:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV
          IK +LP I  N  + KP W    +  ++++S K    ++       ++E    K+LWRS IP+KCKFFIWT++H+K+NTMDNIQK+  +  L+PSWC+
Subjt:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV

Query:  LCKNQNEDLNHLFRNCEKAATLW
         C++ NED+NHLF  C  A +LW
Subjt:  LCKNQNEDLNHLFRNCEKAATLW

TYK28859.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.5e-50

43.5

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Query:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW
        H G + ++ +  S  +PW  I K  DW+ESKI+W  N+G + SFW S W +  PLS   PR +AL+  ++A++K+ WD  S D N  PRRP N+RE + W
Subjt:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW

Query:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV
          IK +LP I  N  + KP W    +  ++++S K    ++       ++E    K+LWRS IP+KCKFFIWT++H+K+NTMDNIQK+  +  L+PSWC+
Subjt:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV

Query:  LCKNQNEDLNHLFRNCEKAATLW
         C++ NED+NHLF  C  A +LW
Subjt:  LCKNQNEDLNHLFRNCEKAATLW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SXS1 LINE-1 retrotransposable element ORF2 protein

3.2e-51

47.6

Show/hide

Query:  PWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRWQQIKSNLPNIQINGKL
        PW  I K  DWFESKI W +N+G + SFWRSNW +  PLS   P  +AL+  +NA++K+ WD +S   N  PRRP NDRE + WQ IK +LP I  +   
Subjt:  PWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRWQQIKSNLPNIQINGKL

Query:  SKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCVLCKNQNEDLNHLFRNC
         KP W+   NN+++++S K     +       ++E    K+LWRS I +KCKFFIWT+IH+K+NTMDNIQK+  + CL+P+WC+ C++ NED+NHLF + 
Subjt:  SKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCVLCKNQNEDLNHLFRNC

Query:  EKAATLWE
         KA  LW+
Subjt:  EKAATLWE

A0A5A7TQA8 LINE-1 retrotransposable element ORF2 protein

7.2e-51

43.5

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Query:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW
        H G + ++ +  S  +PW  I K  DW+ESKI+W  N+G + SFW S W +  PLS   PR +AL+  ++A++K+ WD  S D N  PRRP N+RE + W
Subjt:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW

Query:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV
          IK +LP I  N  + KP W    +  ++++S K    ++       ++E    K+LWRS IP+KCKFFIWT++H+K+NTMDNIQK+  +  L+PSWC+
Subjt:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV

Query:  LCKNQNEDLNHLFRNCEKAATLW
         C++ NED+NHLF  C  A +LW
Subjt:  LCKNQNEDLNHLFRNCEKAATLW

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein

7.2e-51

43.5

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Query:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW
        H G + ++ +  S  +PW  I K  DW+ESKI+W  N+G + SFW S W +  PLS   PR +AL+  ++A++K+ WD  S D N  PRRP N+RE + W
Subjt:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW

Query:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV
          IK +LP I  N  + KP W    +  ++++S K    ++       ++E    K+LWRS IP+KCKFFIWT++H+K+NTMDNIQK+  +  L+PSWC+
Subjt:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV

Query:  LCKNQNEDLNHLFRNCEKAATLW
         C++ NED+NHLF  C  A +LW
Subjt:  LCKNQNEDLNHLFRNCEKAATLW

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein

7.2e-51

43.5

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Query:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW
        H G + ++ +  S  +PW  I K  DW+ESKI+W  N+G + SFW S W +  PLS   PR +AL+  ++A++K+ WD  S D N  PRRP N+RE + W
Subjt:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW

Query:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV
          IK +LP I  N  + KP W    +  ++++S K    ++       ++E    K+LWRS IP+KCKFFIWT++H+K+NTMDNIQK+  +  L+PSWC+
Subjt:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV

Query:  LCKNQNEDLNHLFRNCEKAATLW
         C++ NED+NHLF  C  A +LW
Subjt:  LCKNQNEDLNHLFRNCEKAATLW

A0A5D3DZM5 LINE-1 retrotransposable element ORF2 protein

7.2e-51

43.5

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Query:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW
        H G + ++ +  S  +PW  I K  DW+ESKI+W  N+G + SFW S W +  PLS   PR +AL+  ++A++K+ WD  S D N  PRRP N+RE + W
Subjt:  HDGPL-IISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRW

Query:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV
          IK +LP I  N  + KP W    +  ++++S K    ++       ++E    K+LWRS IP+KCKFFIWT++H+K+NTMDNIQK+  +  L+PSWC+
Subjt:  QQIKSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCV

Query:  LCKNQNEDLNHLFRNCEKAATLW
         C++ NED+NHLF  C  A +LW
Subjt:  LCKNQNEDLNHLFRNCEKAATLW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

5.0e-04

22.05

Show/hide

Query:  EINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRN---FFPRRPFNDREVRRWQQIKSNLPNIQINGKLSKPKWKLERNNIFSI
        ++ NGE+ SFW   W+ +G L      F   A  +   ++ +  +    RN   F P    ++ ++       + +P+ +  G+ S   W+    +    
Subjt:  EINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRN---FFPRRPFNDREVRRWQQIKSNLPNIQINGKLSKPKWKLERNNIFSI

Query:  SSVKHSIHEDQVAIGNNHFEPT--YYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCVLCKNQNEDLNHLFRNCEKAATLWE
         S + +  + +V        PT  + K +W      +     W    E++ T D ++    N    PS  VLC N +E   HLF  C  +  +WE
Subjt:  SSVKHSIHEDQVAIGNNHFEPT--YYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCVLCKNQNEDLNHLFRNCEKAATLWE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGGCGAAAAGAGGGCGGAGCACGACGGACCTCTAATCATCAGCAAGAAAAAAAGCAAGAAAGCTCCTTGGTGTCAAATCATCAAAGGAATTGACTGGTTCGAGAG
TAAAATCACGTGGGAAATCAACAATGGAGAAAATCGATCTTTTTGGCGTAGTAATTGGAGTTCTTATGGCCCTTTATCAAAAATTGCTCCAAGGTTTTTTGCTCTAGCAA
CAACAAAGAATGCTTCTTTAAAGGACAACTGGGATATTGCTTCTAGAGACAGGAATTTCTTTCCAAGAAGGCCTTTTAACGATAGAGAAGTAAGAAGATGGCAGCAAATC
AAAAGCAACCTTCCAAATATCCAGATTAATGGAAAATTGAGCAAACCAAAGTGGAAGCTTGAAAGAAATAATATCTTTTCCATCTCATCAGTTAAGCATTCTATACATGA
AGATCAAGTTGCAATTGGGAATAACCATTTTGAGCCAACATACTACAAAAACTTATGGAGATCATCTATACCAAAGAAATGTAAGTTTTTCATTTGGACGGTTATTCATG
AAAAGATCAACACCATGGACAATATACAGAAAAAATGGACAAATAAGTGCCTAAGTCCAAGCTGGTGCGTGCTTTGCAAAAACCAAAATGAAGACCTCAACCACCTTTTC
AGAAATTGCGAAAAAGCGGCTACTCTATGGGAGAATCTAAAAAGGGAGATTGTAGCTCATGGCTCCAATGGAGTCTTTCTACATTCTATCATCTTATCGTTTCCTTGA

mRNA sequence

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Protein sequence

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MAGEKRAEHDGPLIISKKKSKKAPWCQIIKGIDWFESKITWEINNGENRSFWRSNWSSYGPLSKIAPRFFALATTKNASLKDNWDIASRDRNFFPRRPFNDREVRRWQQI
KSNLPNIQINGKLSKPKWKLERNNIFSISSVKHSIHEDQVAIGNNHFEPTYYKNLWRSSIPKKCKFFIWTVIHEKINTMDNIQKKWTNKCLSPSWCVLCKNQNEDLNHLF
RNCEKAATLWENLKREIVAHGSNGVFLHSIILSFP

PI0020038 (gene) of Melon (PI 482460) v1 genome