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PI0020049 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020049
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr11:14307007..14312733
RNA-Seq ExpressionPI0020049
SyntenyPI0020049
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049700.1 T4.5 [Cucumis melo var. makuwa]4.2e-2052.17Show/hide
Query:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM
        S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT        N+SS + +  Q        IAKDQALMT+IN  
Subjt:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM

Query:  LSPKAVAYIIGCTSS
        LSP+A+AY++G TSS
Subjt:  LSPKAVAYIIGCTSS

KAE8645659.1 hypothetical protein Csa_020439 [Cucumis sativus]3.2e-2053.98Show/hide
Query:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTN------TSSAAKIAVQ--------IAKDQALMTLINTMLS
        S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKLF FVDGTN       S+ + +  Q        IAKDQALMT+IN  LS
Subjt:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTN------TSSAAKIAVQ--------IAKDQALMTLINTMLS

Query:  PKAVAYIIGCTSS
        P+A+AY++G TSS
Subjt:  PKAVAYIIGCTSS

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]4.2e-2052.17Show/hide
Query:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM
        S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT        N+SS + +  Q        IAKDQALMT+IN  
Subjt:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM

Query:  LSPKAVAYIIGCTSS
        LSP+A+AY++G TSS
Subjt:  LSPKAVAYIIGCTSS

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]4.2e-2052.17Show/hide
Query:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM
        S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT        N+SS + +  Q        IAKDQALMT+IN  
Subjt:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM

Query:  LSPKAVAYIIGCTSS
        LSP+A+AY++G TSS
Subjt:  LSPKAVAYIIGCTSS

XP_011658579.1 uncharacterized protein LOC105436058 [Cucumis sativus]3.2e-2053.98Show/hide
Query:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTN------TSSAAKIAVQ--------IAKDQALMTLINTMLS
        S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKLF FVDGTN       S+ + +  Q        IAKDQALMT+IN  LS
Subjt:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTN------TSSAAKIAVQ--------IAKDQALMTLINTMLS

Query:  PKAVAYIIGCTSS
        P+A+AY++G TSS
Subjt:  PKAVAYIIGCTSS

TrEMBL top hitse value%identityAlignment
A0A1S3BI58 uncharacterized protein LOC103490319 isoform X22.0e-2052.17Show/hide
Query:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM
        S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT        N+SS + +  Q        IAKDQALMT+IN  
Subjt:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM

Query:  LSPKAVAYIIGCTSS
        LSP+A+AY++G TSS
Subjt:  LSPKAVAYIIGCTSS

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X32.0e-2052.17Show/hide
Query:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM
        S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT        N+SS + +  Q        IAKDQALMT+IN  
Subjt:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM

Query:  LSPKAVAYIIGCTSS
        LSP+A+AY++G TSS
Subjt:  LSPKAVAYIIGCTSS

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X12.0e-2052.17Show/hide
Query:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM
        S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT        N+SS + +  Q        IAKDQALMT+IN  
Subjt:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM

Query:  LSPKAVAYIIGCTSS
        LSP+A+AY++G TSS
Subjt:  LSPKAVAYIIGCTSS

A0A5D3CLI6 T4.52.0e-2052.17Show/hide
Query:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM
        S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT        N+SS + +  Q        IAKDQALMT+IN  
Subjt:  SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT--------NTSSAAKIAVQ--------IAKDQALMTLINTM

Query:  LSPKAVAYIIGCTSS
        LSP+A+AY++G TSS
Subjt:  LSPKAVAYIIGCTSS

A0A6J1E049 uncharacterized protein LOC1110251505.5e-1850Show/hide
Query:  RDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTNTSSAAKIAVQ-------------------IAKDQALMTLINTMLSPKAVA
        +D+ SPIFLL+NICNL+S+ LDSSN+VLWKFQ +++LK HKL+ F+DG +T   A+  V                    IAKD ALMTL+N  LS  A+A
Subjt:  RDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTNTSSAAKIAVQ-------------------IAKDQALMTLINTMLSPKAVA

Query:  YIIGCTSS
        Y++GC SS
Subjt:  YIIGCTSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGACATAAAGGTTTTGAAGAAGGGTATTCGGGCCATACGGTGTTTTTCCGATCGAGGCGAAAGACAAAAAGGTCTAAAGTTTGAGTTCTTAGGCATATCCCGGTG
TAATTCAACCGAGACTGGAGTGAATTCTCATGCCATCTCGGGTGGGCTTGGGCTTGGGATTGGCGGTTATGGCAGATTGCAAGGCGTTTTGGAGTTGCTTGCAGAGGAGG
CGATGAGTGTCTGCGGTGAGGCACGCGAGCTTGGGAAGCAGATGTTGGATGAGGTGGGCGGTGAAGTGTGCAGTGTTTTGGACGGCCTGCCTTGCGGTAAGAGATCCATG
GCTTTCACATCCGATACTCAACTAAGAGACATTCAATCTCCTATATTTCTTCTCACCAATATTTGCAACCTCATCTCTATATGGCTCGATTCGTCCAACTATGTCCTTTG
GAAATTTCAATTCTCCTCCATGTTGAAAGTGCACAAACTCTTCAGTTTTGTTGATGGGACGAATACATCTTCGGCCGCGAAGATTGCAGTTCAGATTGCTAAGGATCAAG
CCCTTATGACGTTAATCAATACAATGTTATCTCCCAAAGCCGTGGCATATATCATTGGATGCACTTCATCCTATGGGTATGGACTACACTCGAGAAATATTACTCCTCCA
ATTCTTGGTCAAATATCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGACATAAAGGTTTTGAAGAAGGGTATTCGGGCCATACGGTGTTTTTCCGATCGAGGCGAAAGACAAAAAGGTCTAAAGTTTGAGTTCTTAGGCATATCCCGGTG
TAATTCAACCGAGACTGGAGTGAATTCTCATGCCATCTCGGGTGGGCTTGGGCTTGGGATTGGCGGTTATGGCAGATTGCAAGGCGTTTTGGAGTTGCTTGCAGAGGAGG
CGATGAGTGTCTGCGGTGAGGCACGCGAGCTTGGGAAGCAGATGTTGGATGAGGTGGGCGGTGAAGTGTGCAGTGTTTTGGACGGCCTGCCTTGCGGTAAGAGATCCATG
GCTTTCACATCCGATACTCAACTAAGAGACATTCAATCTCCTATATTTCTTCTCACCAATATTTGCAACCTCATCTCTATATGGCTCGATTCGTCCAACTATGTCCTTTG
GAAATTTCAATTCTCCTCCATGTTGAAAGTGCACAAACTCTTCAGTTTTGTTGATGGGACGAATACATCTTCGGCCGCGAAGATTGCAGTTCAGATTGCTAAGGATCAAG
CCCTTATGACGTTAATCAATACAATGTTATCTCCCAAAGCCGTGGCATATATCATTGGATGCACTTCATCCTATGGGTATGGACTACACTCGAGAAATATTACTCCTCCA
ATTCTTGGTCAAATATCGTAA
Protein sequenceShow/hide protein sequence
MKDIKVLKKGIRAIRCFSDRGERQKGLKFEFLGISRCNSTETGVNSHAISGGLGLGIGGYGRLQGVLELLAEEAMSVCGEARELGKQMLDEVGGEVCSVLDGLPCGKRSM
AFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTNTSSAAKIAVQIAKDQALMTLINTMLSPKAVAYIIGCTSSYGYGLHSRNITPP
ILGQIS