| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0054861.1 DNA-directed RNA polymerase 1B [Cucumis melo var. makuwa] | 1.6e-16 | 50.39 | Show/hide |
Query: LSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYL----------------------------------ILVPITIQLGCCLIQLL
LSSL++RVKEGRRSF EET+PVA+ KDHD LRKKV L + L ILVPI QLGC L+QLL
Subjt: LSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYL----------------------------------ILVPITIQLGCCLIQLL
Query: METAYIQPLVDQLGNGPLDIRPAFVHY
METAYIQP VD+LG+GP+DI PAFV Y
Subjt: METAYIQPLVDQLGNGPLDIRPAFVHY
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| XP_022149021.1 DNA-directed RNA polymerase 1B, mitochondrial [Momordica charantia] | 1.2e-13 | 52.63 | Show/hide |
Query: RSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
++ E E +PVAE+QEKLAK+ D+LRKKV L + L V + +++GC L+QLLMETAYIQP +DQLGNGP DIRPAFVH
Subjt: RSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
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| XP_022944908.1 DNA-directed RNA polymerase 1B, mitochondrial-like [Cucurbita moschata] | 4.0e-12 | 48.04 | Show/hide |
Query: QRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAF
++ K ++ E +TEPV + QEKLAK+ D+LRKKV L + L V + +++GC LIQLL+ETAYIQP +DQLG GP DIRPAF
Subjt: QRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAF
Query: VH
VH
Subjt: VH
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| XP_022944910.1 DNA-directed RNA polymerase 1B, mitochondrial-like [Cucurbita moschata] | 4.0e-12 | 47.57 | Show/hide |
Query: QQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPA
+++ ++ E +TEPV E QEKLAK+ D+LRKKV L + L V + +++GC LIQLL+ETAYIQP +DQLG GP DIRPA
Subjt: QQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPA
Query: FVH
FVH
Subjt: FVH
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| XP_023542839.1 DNA-directed RNA polymerase 1B, mitochondrial-like [Cucurbita pepo subsp. pepo] | 3.0e-12 | 48.04 | Show/hide |
Query: QRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAF
++ K ++ E +TEPV E QEK+AK+ D+LRKKV L + L V + +++GC LIQLL+ETAYIQP +DQLG GP DIRPAF
Subjt: QRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAF
Query: VH
VH
Subjt: VH
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LBV4 Uncharacterized protein | 1.7e-29 | 74.29 | Show/hide |
Query: MGRVLSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKK--------VYILTTRYYLILVPITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRP
MGRVLSSL++RVK GRRSFEEETEPVAEQQEKLAKDHDRL+KK + L+T ILV IT QLGCCL+QLLMETAYIQP VDQLG+G LDIRP
Subjt: MGRVLSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKK--------VYILTTRYYLILVPITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRP
Query: AFVHY
AFV+Y
Subjt: AFVHY
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| A0A5D3DS53 DNA-directed RNA polymerase 1B | 7.6e-17 | 50.39 | Show/hide |
Query: LSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYL----------------------------------ILVPITIQLGCCLIQLL
LSSL++RVKEGRRSF EET+PVA+ KDHD LRKKV L + L ILVPI QLGC L+QLL
Subjt: LSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYL----------------------------------ILVPITIQLGCCLIQLL
Query: METAYIQPLVDQLGNGPLDIRPAFVHY
METAYIQP VD+LG+GP+DI PAFV Y
Subjt: METAYIQPLVDQLGNGPLDIRPAFVHY
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| A0A6J1D747 DNA-directed RNA polymerase | 6.0e-14 | 52.63 | Show/hide |
Query: RSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
++ E E +PVAE+QEKLAK+ D+LRKKV L + L V + +++GC L+QLLMETAYIQP +DQLGNGP DIRPAFVH
Subjt: RSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
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| A0A6J1FZC4 DNA-directed RNA polymerase | 1.9e-12 | 48.04 | Show/hide |
Query: QRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAF
++ K ++ E +TEPV + QEKLAK+ D+LRKKV L + L V + +++GC LIQLL+ETAYIQP +DQLG GP DIRPAF
Subjt: QRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAF
Query: VH
VH
Subjt: VH
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| A0A6J1FZD9 DNA-directed RNA polymerase | 1.9e-12 | 47.57 | Show/hide |
Query: QQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPA
+++ ++ E +TEPV E QEKLAK+ D+LRKKV L + L V + +++GC LIQLL+ETAYIQP +DQLG GP DIRPA
Subjt: QQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILVPIT---------------IQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPA
Query: FVH
FVH
Subjt: FVH
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P69242 DNA-directed RNA polymerase 3, chloroplastic | 1.3e-05 | 39.29 | Show/hide |
Query: AEQQEKLAKDHDRLRKKVYILTTRYYLILV--------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
A+ QE ++++ LRK+V L R ++ V +LGC L++LL ETAY+QP VDQ + P DIRPAF H
Subjt: AEQQEKLAKDHDRLRKKVYILTTRYYLILV--------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
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| P69243 DNA-directed RNA polymerase 3A, chloroplastic | 1.3e-05 | 39.29 | Show/hide |
Query: AEQQEKLAKDHDRLRKKVYILTTRYYLILV--------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
A+ QE ++++ LRK+V L R ++ V +LGC L++LL ETAY+QP VDQ + P DIRPAF H
Subjt: AEQQEKLAKDHDRLRKKVYILTTRYYLILV--------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
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| P92969 DNA-directed RNA polymerase 1, mitochondrial | 9.9e-06 | 35.51 | Show/hide |
Query: RVLSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGP
R+ S LQ++ K+ TE +E +AK+ ++ RK+V +L + L V +++G LIQLLME AYIQP +Q +GP
Subjt: RVLSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGP
Query: LDIRPAF
DIRPAF
Subjt: LDIRPAF
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| Q8L6J5 DNA-directed RNA polymerase 1B, mitochondrial | 3.3e-09 | 48.1 | Show/hide |
Query: LAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
+ K+ +RLRKKV IL + L V +++GC LIQ+LMETAYIQP DQL +GP DIRPAFVH
Subjt: LAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
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| Q93Y94 DNA-directed RNA polymerase 1, mitochondrial | 8.1e-08 | 45.57 | Show/hide |
Query: LAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
+ K+ +R+RKKV IL + L V +++GC LIQ+LMETAYIQP DQL + P DIRPAFVH
Subjt: LAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRPAFVH
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G68990.1 male gametophyte defective 3 | 7.0e-07 | 35.51 | Show/hide |
Query: RVLSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGP
R+ S LQ++ K+ TE +E +AK+ ++ RK+V +L + L V +++G LIQLLME AYIQP +Q +GP
Subjt: RVLSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGP
Query: LDIRPAF
DIRPAF
Subjt: LDIRPAF
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| AT1G68990.2 male gametophyte defective 3 | 7.0e-07 | 35.51 | Show/hide |
Query: RVLSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGP
R+ S LQ++ K+ TE +E +AK+ ++ RK+V +L + L V +++G LIQLLME AYIQP +Q +GP
Subjt: RVLSSLQQRVKEGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYLILV---------------PITIQLGCCLIQLLMETAYIQPLVDQLGNGP
Query: LDIRPAF
DIRPAF
Subjt: LDIRPAF
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| AT5G15700.1 DNA/RNA polymerases superfamily protein | 1.5e-04 | 33.65 | Show/hide |
Query: RVLSSLQQRVK--EGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYL--------ILVPITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRP
R+ + L ++ K + S E E ++Q+KL K + L KK + R L + + ++G LI+LL+ TAYIQ DQ N D+RP
Subjt: RVLSSLQQRVK--EGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYL--------ILVPITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRP
Query: AFVH
AFVH
Subjt: AFVH
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| AT5G15700.2 DNA/RNA polymerases superfamily protein | 1.5e-04 | 33.65 | Show/hide |
Query: RVLSSLQQRVK--EGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYL--------ILVPITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRP
R+ + L ++ K + S E E ++Q+KL K + L KK + R L + + ++G LI+LL+ TAYIQ DQ N D+RP
Subjt: RVLSSLQQRVK--EGRRSFEEETEPVAEQQEKLAKDHDRLRKKVYILTTRYYL--------ILVPITIQLGCCLIQLLMETAYIQPLVDQLGNGPLDIRP
Query: AFVH
AFVH
Subjt: AFVH
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