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PI0020072 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020072
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionUnknown protein
Genome locationchr08:3645142..3645582
RNA-Seq ExpressionPI0020072
SyntenyPI0020072
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]1.3e-4674.29Show/hide
Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV
        RGR +STSSKG R SSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPP S  SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV
          +KRF+PRPEIK+YF+K + +YDPIIEPEYQSLTL+E V
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]9.8e-4773.57Show/hide
Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV
        RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PP S  SN +SSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV
         P+KRF+PRP+IK YF+K + +YDP IE EYQSLTL+E V
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.0e-4775Show/hide
Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV
        RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPP S  SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV
         P+KRF+PRPEIK+YF+K + +YDPIIE EYQSLT +ETV
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV

KAA0053156.1 hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa]5.9e-4475.19Show/hide
Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV
        RGR +STSSKG+R SSS N APSPMS DQYAM LGFTT+T+SK+RSSGIRI SPTES TPPRP ANL+RPSG + QMR PTS LSN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQS
         P+KRF+PR EIK+YF+K   +YDPIIEP YQ+
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQS

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]1.4e-4574.64Show/hide
Query:  RVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAP
        R +STSS+G+R SSS N APSPMSADQYAMDLGFTTVTRS+ARSS I+I SPT+SSTPPR SANL+RPS  + QMRP  S LSN ESSTPPTTYSQ + P
Subjt:  RVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAP

Query:  EKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV
        +KRF+PR EIK+YF+K V +YD IIEPEYQSLTL+ETV
Subjt:  EKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein9.5e-4875Show/hide
Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV
        RGR +STSSKG+R  SS N APSP+SADQYAMDLGFTTVTR  +RS GI I SPTESSTPPRPS NL+RPS G+ QMRPP S  SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV
         P+KRF+PRPEIK+YF+K + +YDPIIE EYQSLT +ETV
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV

A0A5A7UFZ9 Uncharacterized protein2.9e-4475.19Show/hide
Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV
        RGR +STSSKG+R SSS N APSPMS DQYAM LGFTT+T+SK+RSSGIRI SPTES TPPRP ANL+RPSG + QMR PTS LSN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQS
         P+KRF+PR EIK+YF+K   +YDPIIEP YQ+
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQS

A0A5D3CKX1 Uncharacterized protein1.1e-4375.59Show/hide
Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV
        RGR +STSSKG+R SSS N APSPMSADQY MDLGFTTV RS++RSS IR ESPTESSTPPRP ANL+RPSG + QMRPP S  SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPII
         P+KRF+PRP+IK+YF+K + +YDPII
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPII

A0A5D3E4J4 Uncharacterized protein4.7e-4773.57Show/hide
Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV
        RGR +STSSKG+RLSSS N APSPMSADQYAMDLGFT VTRS++R SGI I  PTESSTPPRPSANL+RP G + QM+PP S  SN +SSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV
         P+KRF+PRP+IK YF+K + +YDP IE EYQSLTL+E V
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV

E5GCE6 Uncharacterized protein6.2e-4774.29Show/hide
Query:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV
        RGR +STSSKG R SSS N  PSPMSA QY MDLGFT VTRS++R S I I SPTESSTPPRPS NL+RPSGG+ QMRPP S  SN ESSTPPTTYSQAV
Subjt:  RGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAV

Query:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV
          +KRF+PRPEIK+YF+K + +YDPIIEPEYQSLTL+E V
Subjt:  APEKRFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATTGTGCGAGGTAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACTCAAATGAGGCCTCCTACCTCTTCTTTATCAAATTTGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTAAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAGAATATCAAAGTCTCACTCTCGATGAGACAGTTTA
A
mRNA sequenceShow/hide mRNA sequence
ATGAGTATTGTGCGAGGTAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACTCAAATGAGGCCTCCTACCTCTTCTTTATCAAATTTGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCCAGAAAAA
CGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTAAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAGAATATCAAAGTCTCACTCTCGATGAGACAGTTTA
A
Protein sequenceShow/hide protein sequence
MSIVRGRGRVSSTSSKGSRLSSSQNPAPSPMSADQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPTSSLSNLESSTPPTTYSQAVAPEK
RFIPRPEIKTYFKKQVAIYDPIIEPEYQSLTLDETV