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PI0020088 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020088
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:5869391..5870813
RNA-Seq ExpressionPI0020088
SyntenyPI0020088
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.5e-6275.74Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MTTLLTSFVQG  LKV K GVC LVGHPNDKC + IEDVN++ KYDP+GNTYNS WRDNPNLRWGNDNQK TQA  +SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPN--PILLENERKRD
        QEMKQQMTQLTT ISK++GKGKLPAQPD+ANVSAISLRSGKI +TP+++EKKVT    P+  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPN--PILLENERKRD

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.5e-6275.15Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MTTLLTSFVQG  LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNPNLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVT--PNPILLENERKRD
        QEMKQQMTQLTT ISK++GKGKL AQ ++ANVSA+SLRSGKI +TP+++EKK T  P P+  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVT--PNPILLENERKRD

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-6275.74Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MT LLTSFVQG  LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNPNLRWGNDNQK TQA  +SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD
        QEMKQQMTQLTT ISK++GKGKL AQPDHANVS ISLRS KI +TP+++EKKVT  P+ L  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-6175.15Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MTTLLTSFVQG   KV K GVCGLVGHPNDKC   IEDVN++ +YDPH NTYNS WRDN NLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD
        Q+MKQQMTQLTT ISK++GKGKLPAQPDHANVSAISLRSGKI +TP+++EKK+T  P+ L  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]3.2e-6275.74Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MT LLTSFVQG  LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNPNLRWGNDNQK TQA  +SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD
        QEMKQQMTQLTT ISK++GKGKL AQPDHANVS ISLRS KI +TP+++EKKVT  P+ L  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.6e-6275.74Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MT LLTSFVQG  LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNPNLRWGNDNQK TQA  +SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD
        QEMKQQMTQLTT ISK++GKGKL AQPDHANVS ISLRS KI +TP+++EKKVT  P+ L  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD

A0A5D3CB46 Retrotransposon gag protein6.0e-6275.15Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MTTLLTSFVQG   KV K GVCGLVGHPNDKC   IEDVN++ +YDPH NTYNS WRDN NLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD
        Q+MKQQMTQLTT ISK++GKGKLPAQPDHANVSAISLRSGKI +TP+++EKK+T  P+ L  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD

A0A5D3CRR8 Retrotransposon gag protein2.7e-6275.15Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MTTLLTSFVQG  LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNPNLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVT--PNPILLENERKRD
        QEMKQQMTQLTT ISK++GKGKL AQ ++ANVSA+SLRSGKI +TP+++EKK T  P P+  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVT--PNPILLENERKRD

A0A5D3DCG3 Retrotransposon gag protein1.6e-6275.74Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MT LLTSFVQG  LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNPNLRWGNDNQK TQA  +SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD
        QEMKQQMTQLTT ISK++GKGKL AQPDHANVS ISLRS KI +TP+++EKKVT  P+ L  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD

E5GBZ4 Retrotransposon gag protein1.2e-6275.74Show/hide
Query:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ
        MTTLLTSFVQG  LKV K GVC LVGHPNDKC + IEDVN++ KYDP+GNTYNS WRDNPNLRWGNDNQK TQA  +SSNQG NL+DI+KAL TNTLSFQ
Subjt:  MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQ

Query:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPN--PILLENERKRD
        QEMKQQMTQLTT ISK++GKGKLPAQPD+ANVSAISLRSGKI +TP+++EKKVT    P+  +NE K +
Subjt:  QEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPN--PILLENERKRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTCTACTTACTTCTTTTGTGCAAGGTGGACTTCTAAAAGTAGCCAAGGGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAGTGCCTCGACTTTATTGA
GGATGTAAATGTCATTTGTAAGTACGATCCCCACGGTAATACATACAATTCGGAATGGAGAGACAACCCAAACTTGAGATGGGGAAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGATGACATAGTCAAAGCTTTAGTTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTC
ACTACCACCATAAGCAAGTTGGAAGGAAAAGGTAAGCTTCCGGCCCAACCAGATCATGCAAATGTGAGTGCCATCTCACTAAGAAGTGGTAAGATTCCTGAAACTCCTTC
TAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCTTCTTGAAAATGAAAGAAAAAGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTCTACTTACTTCTTTTGTGCAAGGTGGACTTCTAAAAGTAGCCAAGGGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAGTGCCTCGACTTTATTGA
GGATGTAAATGTCATTTGTAAGTACGATCCCCACGGTAATACATACAATTCGGAATGGAGAGACAACCCAAACTTGAGATGGGGAAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGATGACATAGTCAAAGCTTTAGTTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTC
ACTACCACCATAAGCAAGTTGGAAGGAAAAGGTAAGCTTCCGGCCCAACCAGATCATGCAAATGTGAGTGCCATCTCACTAAGAAGTGGTAAGATTCCTGAAACTCCTTC
TAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCTTCTTGAAAATGAAAGAAAAAGGGATTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQL
TTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILLENERKRD