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PI0020142 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020142
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr04:27547623..27550118
RNA-Seq ExpressionPI0020142
SyntenyPI0020142
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036767.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]9.0e-1952.54Show/hide
Query:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS------------------------------MMMMPPFGTSYYP---GQ
        RSNN RLR+V DDPQQVLNICN NE+YMENIHYMYDVPIVP   QRRR  V                               +MMMP FGT+YY    GQ
Subjt:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS------------------------------MMMMPPFGTSYYP---GQ

Query:  SSYFKLGYYNSEDDISKT
        SS F  GYYNS+   S T
Subjt:  SSYFKLGYYNSEDDISKT

KAA0051233.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.3e-1952.5Show/hide
Query:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---
        RSNN RLR+V DDPQQVLNICN NE+YMENIHYMYDVPIVP   QRRR  V                                 +MMMP FGT+YY    
Subjt:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---

Query:  GQSSYFKLGYYNSEDDISKT
        GQSS F  GYYNSE   S T
Subjt:  GQSSYFKLGYYNSEDDISKT

KAA0054449.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]3.1e-1941.53Show/hide
Query:  MAPQLRNVNEHQLAGNAYGS-----------QYMFDLIQ---------------------PDQRSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDV
        +APQL +VN +QL G AYGS           Q+  D+ Q                        RSNN RLR+V DD QQVLNICN NE+YMENIHYMYDV
Subjt:  MAPQLRNVNEHQLAGNAYGS-----------QYMFDLIQ---------------------PDQRSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDV

Query:  PIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---GQSSYFKLGYYNSEDDISKT
        PIV    Q+RR  V                                 +MMMP FGT+YY    GQSS F+ GYYNSE   S T
Subjt:  PIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---GQSSYFKLGYYNSEDDISKT

KAA0067080.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]3.1e-1953.39Show/hide
Query:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS------------------------------MMMMPPFGTSYYP---GQ
        RSNN RLR+V DDPQQVLNICN NE+YMENIHYMYDVPIVP   QRRR  V                               +MMMP FGT+YY    GQ
Subjt:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS------------------------------MMMMPPFGTSYYP---GQ

Query:  SSYFKLGYYNSEDDISKT
        SS F  GYYNSE   S T
Subjt:  SSYFKLGYYNSEDDISKT

TYK18891.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.3e-1952.5Show/hide
Query:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---
        RSNN RLR+V DDPQQVLNICN NE+YMENIHYMYDVPIVP   QRRR  V                                 +MMMP FGT+YY    
Subjt:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---

Query:  GQSSYFKLGYYNSEDDISKT
        GQSS F  GYYNSE   S T
Subjt:  GQSSYFKLGYYNSEDDISKT

TrEMBL top hitse value%identityAlignment
A0A5A7U5S8 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.6e-1952.5Show/hide
Query:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---
        RSNN RLR+V DDPQQVLNICN NE+YMENIHYMYDVPIVP   QRRR  V                                 +MMMP FGT+YY    
Subjt:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---

Query:  GQSSYFKLGYYNSEDDISKT
        GQSS F  GYYNSE   S T
Subjt:  GQSSYFKLGYYNSEDDISKT

A0A5A7ULW8 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.5e-1941.53Show/hide
Query:  MAPQLRNVNEHQLAGNAYGS-----------QYMFDLIQ---------------------PDQRSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDV
        +APQL +VN +QL G AYGS           Q+  D+ Q                        RSNN RLR+V DD QQVLNICN NE+YMENIHYMYDV
Subjt:  MAPQLRNVNEHQLAGNAYGS-----------QYMFDLIQ---------------------PDQRSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDV

Query:  PIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---GQSSYFKLGYYNSEDDISKT
        PIV    Q+RR  V                                 +MMMP FGT+YY    GQSS F+ GYYNSE   S T
Subjt:  PIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---GQSSYFKLGYYNSEDDISKT

A0A5A7VIP6 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.5e-1953.39Show/hide
Query:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS------------------------------MMMMPPFGTSYYP---GQ
        RSNN RLR+V DDPQQVLNICN NE+YMENIHYMYDVPIVP   QRRR  V                               +MMMP FGT+YY    GQ
Subjt:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS------------------------------MMMMPPFGTSYYP---GQ

Query:  SSYFKLGYYNSEDDISKT
        SS F  GYYNSE   S T
Subjt:  SSYFKLGYYNSEDDISKT

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein4.4e-1952.54Show/hide
Query:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS------------------------------MMMMPPFGTSYYP---GQ
        RSNN RLR+V DDPQQVLNICN NE+YMENIHYMYDVPIVP   QRRR  V                               +MMMP FGT+YY    GQ
Subjt:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS------------------------------MMMMPPFGTSYYP---GQ

Query:  SSYFKLGYYNSEDDISKT
        SS F  GYYNS+   S T
Subjt:  SSYFKLGYYNSEDDISKT

A0A5D3D5R5 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.6e-1952.5Show/hide
Query:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---
        RSNN RLR+V DDPQQVLNICN NE+YMENIHYMYDVPIVP   QRRR  V                                 +MMMP FGT+YY    
Subjt:  RSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVS--------------------------------MMMMPPFGTSYYP---

Query:  GQSSYFKLGYYNSEDDISKT
        GQSS F  GYYNSE   S T
Subjt:  GQSSYFKLGYYNSEDDISKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCTCAACTTCGAAATGTCAACGAACATCAATTAGCAGGAAATGCCTATGGTTCACAGTACATGTTTGACCTTATTCAACCTGACCAGAGATCGAACAATAGTAG
ACTTCGTGATGTGGTAGATGATCCACAACAGGTTCTTAATATATGCAACAAAAACGAGCGGTACATGGAGAATATACATTATATGTATGATGTACCCATTGTACCAACAC
TAGCCCAAAGGAGACGTGCTCAAGTTTCAATGATGATGATGCCACCCTTTGGTACGAGCTATTATCCTGGTCAATCATCATACTTCAAATTAGGATATTACAATTCAGAG
GATGATATCTCAAAGACTTGTGTTGATAAAGAGCCGTCTCCAAACAATGTTTGGACACAAGCTTTGGGTACACAAGAGAGTAGTGGACGTGAACGTGGTGTTGGCGGGTT
TGTCACCCCAACTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCTCAACTTCGAAATGTCAACGAACATCAATTAGCAGGAAATGCCTATGGTTCACAGTACATGTTTGACCTTATTCAACCTGACCAGAGATCGAACAATAGTAG
ACTTCGTGATGTGGTAGATGATCCACAACAGGTTCTTAATATATGCAACAAAAACGAGCGGTACATGGAGAATATACATTATATGTATGATGTACCCATTGTACCAACAC
TAGCCCAAAGGAGACGTGCTCAAGTTTCAATGATGATGATGCCACCCTTTGGTACGAGCTATTATCCTGGTCAATCATCATACTTCAAATTAGGATATTACAATTCAGAG
GATGATATCTCAAAGACTTGTGTTGATAAAGAGCCGTCTCCAAACAATGTTTGGACACAAGCTTTGGGTACACAAGAGAGTAGTGGACGTGAACGTGGTGTTGGCGGGTT
TGTCACCCCAACTGCTTAG
Protein sequenceShow/hide protein sequence
MAPQLRNVNEHQLAGNAYGSQYMFDLIQPDQRSNNSRLRDVVDDPQQVLNICNKNERYMENIHYMYDVPIVPTLAQRRRAQVSMMMMPPFGTSYYPGQSSYFKLGYYNSE
DDISKTCVDKEPSPNNVWTQALGTQESSGRERGVGGFVTPTA