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PI0020169 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020169
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein RADIALIS-like 1
Genome locationchr01:6135089..6137254
RNA-Seq ExpressionPI0020169
SyntenyPI0020169
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]3.9e-3797.53Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]6.1e-3898.77Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]6.1e-3898.77Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]3.9e-3797.53Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ

XP_038888369.1 protein RADIALIS-like 1 [Benincasa hispida]2.4e-3492.5Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGN
        MASMSSHGSG+WT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HYALLVEDVKFIESGQVPFPYR+S GGN
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGN

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein2.9e-3898.77Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ

A0A1S3BFW6 protein RADIALIS-like 11.9e-3797.53Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ

A0A5A7SYK4 Protein RADIALIS-like 11.9e-3797.53Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
        MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSG GNQ
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ

A0A6J1C385 protein RADIALIS-like 12.2e-3390Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGN
        MASMSSHGS  WT  QNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIESGQV FPYRTSGGG+
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGN

A0A6J1GJE9 protein RADIALIS-like 17.5e-3491.46Show/hide
Query:  MASMSSHGS-GTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ
        MASMSSHGS GTWTV QNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVEDVKFIESGQVPFPYRTSGGG Q
Subjt:  MASMSSHGS-GTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.3e-2774.36Show/hide
Query:  ASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGG
        +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSGG
Subjt:  ASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGG

Q1A173 Protein RADIALIS-like 64.9e-2268.42Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT

Q58FS3 Transcription factor RADIALIS8.0e-2569.74Show/hide
Query:  SSHGSG-TWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGG
        S+ GSG  W+  +NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+IESG+VPFP YRT+GG
Subjt:  SSHGSG-TWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGG

Q6NNN0 Protein RADIALIS-like 39.8e-2363.75Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGN
        MAS S   S +WT  +NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ DV  IESG+ P P   S G N
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGN

Q9SIJ5 Protein RADIALIS-like 21.5e-2672.15Show/hide
Query:  SMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGN
        SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP Y+T+ G +
Subjt:  SMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.0e-2263.41Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGNQ
        MAS S   S +WT  QNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE   VP P Y+T   G++
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGNQ

AT1G75250.1 RAD-like 63.5e-2368.42Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT

AT1G75250.2 RAD-like 63.5e-2368.42Show/hide
Query:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE+G+VP P Y+T
Subjt:  MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRT

AT2G21650.1 Homeodomain-like superfamily protein1.0e-2772.15Show/hide
Query:  SMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGN
        SMSS+GSG+WTV QNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE+G VPFP Y+T+ G +
Subjt:  SMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGGGN

AT4G39250.1 RAD-like 11.6e-2874.36Show/hide
Query:  ASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGG
        +SMSS  SG+WT  QNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE+G VPFP YRTSGG
Subjt:  ASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFP-YRTSGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAATGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAA
TGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATC
GAACCTCCGGAGGTGGTAACCAAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAATGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAA
TGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATC
GAACCTCCGGAGGTGGTAACCAAGTTTAA
Protein sequenceShow/hide protein sequence
MASMSSHGSGTWTVMQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGGGNQV