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PI0020174 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020174
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:18533224..18534559
RNA-Seq ExpressionPI0020174
SyntenyPI0020174
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]9.7e-2080Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHDVKN VIQREF+ SGETISRHF++VLLAV+RL DELL KPQPV N CTD RWRWFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]9.7e-2080Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHDVKN VIQREF+ SGETISRHF++VLLAV+RL DELL KPQPV N CTD RWRWFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
KAA0048281.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-2078.33Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHDVKNCVIQREF+ SGE ISRHF++VLLAV+RL +ELL KPQPV N CTD RWRWFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
KAA0050755.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.6e-1976.67Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHD+KN +IQR+F+ SGET+SRHF+LVLLAVLRL DELL KPQPVTN+CTD RW+WFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
KAA0057637.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.7e-2080Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHDVKN VIQREF+ SGETISRHF++VLLAV+RL DELL KPQPV N CTD RWRWFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein4.7e-2080Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHDVKN VIQREF+ SGETISRHF++VLLAV+RL DELL KPQPV N CTD RWRWFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
A0A5A7TXW1 Retrotransposon protein4.7e-2080Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHDVKN VIQREF+ SGETISRHF++VLLAV+RL DELL KPQPV N CTD RWRWFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
A0A5A7U3Z5 Retrotransposon protein2.7e-2078.33Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHDVKNCVIQREF+ SGE ISRHF++VLLAV+RL +ELL KPQPV N CTD RWRWFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
A0A5A7UAW6 Putative nuclease HARBI18.0e-2076.67Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHD+KN +IQR+F+ SGET+SRHF+LVLLAVLRL DELL KPQPVTN+CTD RW+WFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
A0A5A7USI0 Putative nuclease HARBI14.7e-2080Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
        +LAHDVKN VIQREF+ SGETISRHF++VLLAV+RL DELL KPQPV N CTD RWRWFE
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)7.2e-0540.38Show/hide
Query:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCT
        ++ H+++   +Q  F +SGETISRHF+ VL AV+ +S +     QP +N+ T
Subjt:  VLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAGAAATGGTGTCCATGTTCTGTACTGGCGCACGACGTGAAAAATTGTGTCATTCAACGTGAGTTTCTATGGTCGGGTGAGACAATTTCACGACATTTCGACTT
GGTACTGCTGGCTGTTTTACGCCTTTCTGACGAGCTATTGGCGAAACCACAACCGGTGACAAACAATTGCACAGATGCACGATGGAGGTGGTTCGAGTATAGCGACTTCT
TCAAGGGCCCCAAAGCACCACTGGACGAAAGAGGAGGATGCCACCCTCGTGGAATGTCTGGTGGAATTGGTATCAGCCGACGGCTGGAGGTCGAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAGAAATGGTGTCCATGTTCTGTACTGGCGCACGACGTGAAAAATTGTGTCATTCAACGTGAGTTTCTATGGTCGGGTGAGACAATTTCACGACATTTCGACTT
GGTACTGCTGGCTGTTTTACGCCTTTCTGACGAGCTATTGGCGAAACCACAACCGGTGACAAACAATTGCACAGATGCACGATGGAGGTGGTTCGAGTATAGCGACTTCT
TCAAGGGCCCCAAAGCACCACTGGACGAAAGAGGAGGATGCCACCCTCGTGGAATGTCTGGTGGAATTGGTATCAGCCGACGGCTGGAGGTCGAACAATAG
Protein sequenceShow/hide protein sequence
MSKKWCPCSVLAHDVKNCVIQREFLWSGETISRHFDLVLLAVLRLSDELLAKPQPVTNNCTDARWRWFEYSDFFKGPKAPLDERGGCHPRGMSGGIGISRRLEVEQ