CuGenDBv2

Gene ID	PI0020184
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr01:16366265..16366468
RNA-Seq Expression	PI0020184
Synteny	PI0020184
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048281.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

KAA0054148.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]

4.5e-23

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLINREMTN+++ DDLDEGDST+ATTGGD+I+YIE SNEWS+WRDQLA TMF+DWEL+ Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

KAA0068124.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-22

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TWH8 Retrotransposon protein

6.4e-23

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

A0A5A7TXW1 Retrotransposon protein

6.4e-23

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

A0A5D3BDX0 Retrotransposon protein

6.4e-23

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

A0A5D3D9Z3 Retrotransposon protein

6.4e-23

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        +ACCLLHNLINREMTN D+ D++DE DSTHATT  DDI YIETSNEWSQWRD LAE MFT+WELRNQ
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

A0A5D3DG22 Retrotransposon protein

2.2e-23

80.6

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Query:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ
        MACCLLHNLINREMTN+++ DDLDEGDST+ATTGGD+I+YIE SNEWS+WRDQLA TMF+DWEL+ Q
Subjt:  MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGATATGAACGACGATCTGGACGAGGGTGATTCGACCCACGCTACTACGGGAGGTGACGA
TATTAGTTACATTGAGACATCAAACGAATGGAGTCAATGGAGGGATCAATTGGCTGAGACGATGTTTACTGATTGGGAGTTACGTAACCAGTAG

mRNA sequence

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Protein sequence

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MACCLLHNLINREMTNNDMNDDLDEGDSTHATTGGDDISYIETSNEWSQWRDQLAETMFTDWELRNQ

PI0020184 (gene) of Melon (PI 482460) v1 genome