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PI0020195 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020195
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr04:20700262..20701226
RNA-Seq ExpressionPI0020195
SyntenyPI0020195
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038951.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.6e-1645.22Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK----------------------------------------------MRSNNSRLRDVVDDPQQILD
        MFDLLQ DQIIWEPYK V+ NL NF KNG  IW+                                              +RSNN+RLRDV DDPQQ+L+
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK----------------------------------------------MRSNNSRLRDVVDDPQQILD

Query:  ICNNNERYMENIHYM
        ICNNN+RYME IH M
Subjt:  ICNNNERYMENIHYM

KAA0064245.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]1.0e-1753.54Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK------------------------------MRSNNSRLRDVVDDPQQILDICNNNERYMENIHYM
        MFDLLQ DQIIWE YK V++NL NF KNG  IW+                               RSNN+RLRDV DDPQQ+LDICNNNERYME IH M
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK------------------------------MRSNNSRLRDVVDDPQQILDICNNNERYMENIHYM

TYK01176.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]3.3e-1669.57Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWKMRSNNSRLRDVVDDPQQILDICNNNERYMENIHYM
        MFDLLQ DQIIWEPYK V++NL NF+         RSNN+RLRDV DD QQ LDICNNNERYME IH M
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWKMRSNNSRLRDVVDDPQQILDICNNNERYMENIHYM

TYK11193.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.6e-1645.22Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK----------------------------------------------MRSNNSRLRDVVDDPQQILD
        MFDLLQ DQIIWEPYK V+ NL NF KNG  IW+                                              +RSNN+RLRDV DDPQQ+L+
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK----------------------------------------------MRSNNSRLRDVVDDPQQILD

Query:  ICNNNERYMENIHYM
        ICNNN+RYME IH M
Subjt:  ICNNNERYMENIHYM

TYK23842.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]4.4e-1337.68Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK------------------------------------------------------------------
        MFDLLQ DQIIWEPYK V++NL NF KNG   W+                                                                  
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK------------------------------------------------------------------

Query:  -----MRSNNSRLRDVVDDPQQILDICNNNERYMENIH
             +RSNN+RLRDVV+DPQQ+LDICNNNERYME IH
Subjt:  -----MRSNNSRLRDVVDDPQQILDICNNNERYMENIH

TrEMBL top hitse value%identityAlignment
A0A5A7TBF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.7e-1645.22Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK----------------------------------------------MRSNNSRLRDVVDDPQQILD
        MFDLLQ DQIIWEPYK V+ NL NF KNG  IW+                                              +RSNN+RLRDV DDPQQ+L+
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK----------------------------------------------MRSNNSRLRDVVDDPQQILD

Query:  ICNNNERYMENIHYM
        ICNNN+RYME IH M
Subjt:  ICNNNERYMENIHYM

A0A5A7VEC1 GATA zinc finger domain-containing protein 10-like isoform X24.9e-1853.54Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK------------------------------MRSNNSRLRDVVDDPQQILDICNNNERYMENIHYM
        MFDLLQ DQIIWE YK V++NL NF KNG  IW+                               RSNN+RLRDV DDPQQ+LDICNNNERYME IH M
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK------------------------------MRSNNSRLRDVVDDPQQILDICNNNERYMENIHYM

A0A5D3BSG8 GATA zinc finger domain-containing protein 10-like isoform X21.6e-1669.57Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWKMRSNNSRLRDVVDDPQQILDICNNNERYMENIHYM
        MFDLLQ DQIIWEPYK V++NL NF+         RSNN+RLRDV DD QQ LDICNNNERYME IH M
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWKMRSNNSRLRDVVDDPQQILDICNNNERYMENIHYM

A0A5D3CH23 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.7e-1645.22Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK----------------------------------------------MRSNNSRLRDVVDDPQQILD
        MFDLLQ DQIIWEPYK V+ NL NF KNG  IW+                                              +RSNN+RLRDV DDPQQ+L+
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK----------------------------------------------MRSNNSRLRDVVDDPQQILD

Query:  ICNNNERYMENIHYM
        ICNNN+RYME IH M
Subjt:  ICNNNERYMENIHYM

A0A5D3DJV7 Serine/threonine-protein phosphatase 7 long form-like protein2.1e-1337.68Show/hide
Query:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK------------------------------------------------------------------
        MFDLLQ DQIIWEPYK V++NL NF KNG   W+                                                                  
Subjt:  MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWK------------------------------------------------------------------

Query:  -----MRSNNSRLRDVVDDPQQILDICNNNERYMENIH
             +RSNN+RLRDVV+DPQQ+LDICNNNERYME IH
Subjt:  -----MRSNNSRLRDVVDDPQQILDICNNNERYMENIH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATCTTCTTCAACCTGATCAGATTATCTGGGAGCCGTACAAAGCTGTCTTGAATAATTTGTCGAATTTCTATAAGAACGGTCACGCCATATGGAAGATGAGGTC
GAACAATAGTAGGCTTCGGGATGTTGTAGATGATCCACAACAGATTCTAGATATATGCAACAATAACGAGCGGTACATGGAGAACATACACTATATGCGAAAAGAGAAGC
AGCCACGTGAAGAAAACGTCAGGCGAGGAACTAGGCGTGCCGCAACGCAAGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATCTTCTTCAACCTGATCAGATTATCTGGGAGCCGTACAAAGCTGTCTTGAATAATTTGTCGAATTTCTATAAGAACGGTCACGCCATATGGAAGATGAGGTC
GAACAATAGTAGGCTTCGGGATGTTGTAGATGATCCACAACAGATTCTAGATATATGCAACAATAACGAGCGGTACATGGAGAACATACACTATATGCGAAAAGAGAAGC
AGCCACGTGAAGAAAACGTCAGGCGAGGAACTAGGCGTGCCGCAACGCAAGGCTAG
Protein sequenceShow/hide protein sequence
MFDLLQPDQIIWEPYKAVLNNLSNFYKNGHAIWKMRSNNSRLRDVVDDPQQILDICNNNERYMENIHYMRKEKQPREENVRRGTRRAATQG