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PI0020206 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020206
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:22327485..22328335
RNA-Seq ExpressionPI0020206
SyntenyPI0020206
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.4e-1647.47Show/hide
Query:  PTFTTSTRGSLTLFEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVGTCGILKSSYNQ
        PTF  + R     FE+KPVMLQM+Q AGQFG    EDPH H++SF  I ++F M G+  + +R  LFP +LRDEA++WA + E GE+ T G +   + Q
Subjt:  PTFTTSTRGSLTLFEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVGTCGILKSSYNQ

XP_030497888.1 uncharacterized protein LOC115713544 [Cannabis sativa]4.7e-1741.67Show/hide
Query:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV-------------------GTCGILK
        FE+KPVM QM+Q  GQFG  P EDPH HI SF  +  SF + G+S E LR  LFP +LRD+A+ W N L    V                       IL 
Subjt:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV-------------------GTCGILK

Query:  SSYNQIKVTLDTMARNNKEW
         SYN+    L+ +A NN +W
Subjt:  SSYNQIKVTLDTMARNNKEW

XP_038874908.1 uncharacterized protein LOC120067411 [Benincasa hispida]1.4e-1642.02Show/hide
Query:  TLFEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRW--------ANALEDGEVGTCGILKSSYNQIKVT
        T FE+K VMLQM+Q AGQF     EDPH H++ F     SF +PGI+PE +R +LFP +LRD+AK+W        A+ +         I+  SY + K  
Subjt:  TLFEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRW--------ANALEDGEVGTCGILKSSYNQIKVT

Query:  LDTMARNNKEWDEDDFGNR
        LD +A++N EW +D +  R
Subjt:  LDTMARNNKEWDEDDFGNR

XP_038889254.1 uncharacterized protein LOC120079150 [Benincasa hispida]2.7e-2046.9Show/hide
Query:  TLFEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV--------GTCGILKSSYNQIKVT
        T FE+K VMLQM+Q A QFG    EDPH H++ F     SF +PGI+PE +R +LFP +LRD+AK+WA++LE  E+         T  I+  SYN+ K  
Subjt:  TLFEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV--------GTCGILKSSYNQIKVT

Query:  LDTMARNNKEWDE
        LD +A++N EW++
Subjt:  LDTMARNNKEWDE

XP_038896304.1 uncharacterized protein LOC120084573 [Benincasa hispida]1.3e-1937.58Show/hide
Query:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVGTC---------------------GI
        FEIKP+MLQMIQNAG+FG    ED H H+ SF  +  +F +P ++PE +R  LFP TL+DEAKRWA +LE  E+                        G+
Subjt:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVGTC---------------------GI

Query:  LKSSYNQIKVTLDTMARNNKEWDEDDFGNRRGGRGRGDEGTSDCDEQST
        +  +Y + K+ LD ++RN  EW ++ +  R   + R +      D  ST
Subjt:  LKSSYNQIKVTLDTMARNNKEWDEDDFGNRRGGRGRGDEGTSDCDEQST

TrEMBL top hitse value%identityAlignment
A0A392MI20 Retrotrans_gag domain-containing protein6.9e-1445.24Show/hide
Query:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVGTCGILKSSY
        FE KP+M QM+Q  GQF     EDPH H+R F  + ++F  PGI+ E  R  LFP +LRD AK W N+LE   + T   L   +
Subjt:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVGTCGILKSSY

A0A5A7TNS8 Uncharacterized protein8.2e-1541.28Show/hide
Query:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALE---------DGEVGTCG-ILKSSYNQIKVT
        F++KP ML MIQ   QFG +  EDP +HI+S Y + +SFH+P +S E+L    F  TL+D+ K+W   LE         D      G +++ +Y QIK T
Subjt:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALE---------DGEVGTCG-ILKSSYNQIKVT

Query:  LDTMARNNK
        LD M+RN++
Subjt:  LDTMARNNK

A0A5A7V2U7 Putative disease resistance RPP13-like protein 12.1e-1567.14Show/hide
Query:  HPTFTTSTRGSLTLFEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPL
        +PTF+ +TR     FEIK VMLQ+IQNAGQF  HP +DPH++IR+FYSI ASFHMPGIS EELRF  F L
Subjt:  HPTFTTSTRGSLTLFEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPL

A0A5D3BCV5 Uncharacterized protein8.7e-1767.69Show/hide
Query:  MIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV
        MIQN  QF  HP +DPH++I SFYSI  SFHMPGI  +ELRFALFP T+ DEAKRWAN+L+ G+V
Subjt:  MIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV

U5CUK7 Uncharacterized protein3.7e-1555.41Show/hide
Query:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV
        FE+KPVM QM+Q  GQFG  P EDPH HIRSF  +  SF + G+S E LR  LFP +LRD A+ W N L    V
Subjt:  FEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCTCTGCCGCAAGCTGCCCCAGAACCAAATGCCGCCTACATGGTACATGACTTGGACAGACCTATTAGATCATATGCGGCACCCAACCTTTACAACTTCAACCCG
GGGATCGCTTACCCTATTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAATGCTGGACAATTTGGCAGTCACCCTATAGAAGATCCACACGAGCATATTAGGAGTT
TTTACTCTATCTATGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAACTGAGATTCGCCCTCTTCCCGTTAACTCTAAGGGATGAGGCGAAGAGGTGGGCCAACGCC
TTGGAGGATGGCGAGGTGGGAACATGTGGTATACTAAAGAGCTCATACAACCAGATTAAGGTGACGTTGGATACAATGGCTAGAAATAATAAAGAATGGGATGAAGATGA
TTTCGGCAATCGCCGAGGAGGACGAGGAAGAGGCGATGAAGGGACAAGTGACTGCGATGAACAATCTACTCAAATCTATGGCAATATTGCAAGTCAATGTCGCAGGAGGC
TCTATGCACGCGGGAAACCAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCTCTGCCGCAAGCTGCCCCAGAACCAAATGCCGCCTACATGGTACATGACTTGGACAGACCTATTAGATCATATGCGGCACCCAACCTTTACAACTTCAACCCG
GGGATCGCTTACCCTATTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAATGCTGGACAATTTGGCAGTCACCCTATAGAAGATCCACACGAGCATATTAGGAGTT
TTTACTCTATCTATGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAACTGAGATTCGCCCTCTTCCCGTTAACTCTAAGGGATGAGGCGAAGAGGTGGGCCAACGCC
TTGGAGGATGGCGAGGTGGGAACATGTGGTATACTAAAGAGCTCATACAACCAGATTAAGGTGACGTTGGATACAATGGCTAGAAATAATAAAGAATGGGATGAAGATGA
TTTCGGCAATCGCCGAGGAGGACGAGGAAGAGGCGATGAAGGGACAAGTGACTGCGATGAACAATCTACTCAAATCTATGGCAATATTGCAAGTCAATGTCGCAGGAGGC
TCTATGCACGCGGGAAACCAAATTGA
Protein sequenceShow/hide protein sequence
MPLCRKLPQNQMPPTWYMTWTDLLDHMRHPTFTTSTRGSLTLFEIKPVMLQMIQNAGQFGSHPIEDPHEHIRSFYSIYASFHMPGISPEELRFALFPLTLRDEAKRWANA
LEDGEVGTCGILKSSYNQIKVTLDTMARNNKEWDEDDFGNRRGGRGRGDEGTSDCDEQSTQIYGNIASQCRRRLYARGKPN