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PI0020213 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020213
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr01:17970569..17971045
RNA-Seq ExpressionPI0020213
SyntenyPI0020213
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-5376.22Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE
        MFGQ SIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]6.0e-5881.82Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE
        MFGQ SIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE

TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-5475Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETTGRSLTSK
        +F Q SIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE  G  +  K
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETTGRSLTSK

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]6.0e-5881.82Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE
        MFGQ SIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]3.4e-5371.23Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M+SSII LL +EKL GDNY+ WKSNLN ILV+DDLRFVL EECP +P  NA++TVR+AYDRW KANEKAR+YILASMSDVL+KKHES+ TA++I+DSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETTG
        +FGQ S  ++HEAIK++Y  RMKEG SVREHVLDMM+ FN+AE  G
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETTG

TrEMBL top hitse value%identityAlignment
A0A5A7VA67 Gag/pol protein2.9e-5881.82Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE
        MFGQ SIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE

A0A5D3BM47 Gag/pol protein1.1e-5475Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETTGRSLTSK
        +F Q SIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE  G  +  K
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETTGRSLTSK

A0A5D3D0D9 Gag/pol protein2.9e-5881.82Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE
        MFGQ SIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE

A0A5D3DIM3 Gag/pol protein1.6e-5377.62Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVL+EECPP P +NASQ+V+D YD WTKAN+KAR+YILASMS++LSKKH  MVTARQIM SL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE
        MFGQSSIQI+ EAIKYVYNARMKEGQ VRE VL+M+V FN+A+
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE

A0A5D3DQJ2 Gag/pol protein1.3e-5376.22Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE
        MFGQ SIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE
Subjt:  MFGQSSIQIQHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCT
TGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTTCAGGAGATGTTTGGACAATCGTCCATTCAAATCCAG
CACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACAACGGGGCG
GTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACTGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCT
TGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTTCAGGAGATGTTTGGACAATCGTCCATTCAAATCCAG
CACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACAACGGGGCG
GTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAG
Protein sequenceShow/hide protein sequence
MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQSSIQIQ
HEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETTGRSLTSKVRYPLS