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PI0020233 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020233
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:11316495..11317443
RNA-Seq ExpressionPI0020233
SyntenyPI0020233
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045094.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-7655.41Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL---
        MEK DIARPISTILDGSNYITWA+QMR              +IT+P+K T  V N S+  TE+++A +  ETT +D +YIERLEDWDSKNHQIITWL   
Subjt:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL---

Query:  ----------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRI
                                                                        GL P+YESVRAALLHRN LPSLDA VQ+ILFE+KR+
Subjt:  ----------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRI

Query:  GIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS
        G+VS +  +VALA TH R  NE++FCKNCKLH HKFANCPTIECRYCHKRGHIL++CPTRPPRPPGHSHKPK SPK GSSSV+AAAT SDIT PSS
Subjt:  GIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.0e-7151.41Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAES----VKETTLKDAQYIERLEDWDSKNHQIITW
        MEKN +ARPISTILDG+NYITWAHQMR              +IT+PVK T  + N S+  TE+++A +    V E T++D QYIERLEDWDSKNHQIITW
Subjt:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAES----VKETTLKDAQYIERLEDWDSKNHQIITW

Query:  L--------------------------------------------------------------------------------------GLHPDYESVRAAL
        L                                                                                      GL  +YESVRAAL
Subjt:  L--------------------------------------------------------------------------------------GLHPDYESVRAAL

Query:  LHRNPLPSLDAIVQKILFEEKRIGIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKS
        LHRNPLPSLDA VQ+ILFEEKR+GIVS + S+VALA TH R  NE++FCKNCKLHGHKFANCPTIECRYC+KRGHIL++CPTRPPRPP HSHK K S K 
Subjt:  LHRNPLPSLDAIVQKILFEEKRIGIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKS

Query:  GSSSVIAAATPSDITTPSS
        GSSSV+AAAT SDIT PSS
Subjt:  GSSSVIAAATPSDITTPSS

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-7560.59Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMRNITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL-----------------
        MEKND+ARPISTILDG+NYITWAHQMR+     K   +VT    +IT+      V ET+ +D QYIERLEDWDSKNHQIITWL                 
Subjt:  MEKNDIARPISTILDGSNYITWAHQMRNITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL-----------------

Query:  -------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRIGIVSPMSSNVALAATHSRPTNESNFCK
                                             GL P+YESVRAALLHRNPLPSLDA VQ+ILFEEKR+GIVS + S+VALA TH R  NE+ FCK
Subjt:  -------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRIGIVSPMSSNVALAATHSRPTNESNFCK

Query:  NCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS
        NCKLHGHKFANCPTIECRYCHKRGHIL++CPTRPPRPPGHSHKPK S K+GSSSV+AAAT SDIT PSS
Subjt:  NCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]1.5e-7254.15Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMRNITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL-----------------
        MEKND+ARPISTILDG+NYITWAHQMR+     K   +VT    +IT+      V ET+ +D QYIERLEDWDSKNHQIITWL                 
Subjt:  MEKNDIARPISTILDGSNYITWAHQMRNITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL-----------------

Query:  ---------------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILF
                                                                             GL P+YESVRAALLHRNPLPSLDA VQ+ILF
Subjt:  ---------------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILF

Query:  EEKRIGIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPS
        EEKR+GIVS + S+VALA TH R  NE+ FCKNCKLHGHKFANCPTIECRYCHKRGHIL++CPTRPPRPPGHSHKPK S K+GSSSV+AAAT SDIT PS
Subjt:  EEKRIGIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPS

Query:  S
        S
Subjt:  S

XP_008450155.1 PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo]1.8e-7655.41Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL---
        MEK DIARPISTILDGSNYITWA+QMR              +IT+P+K T  V N S+  TE+++A +  ETT +D +YIERLEDWDSKNHQIITWL   
Subjt:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL---

Query:  ----------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRI
                                                                        GL P+YESVRAALLHRN LPSLDA VQ+ILFE+KR+
Subjt:  ----------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRI

Query:  GIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS
        G+VS +  +VALA TH R  NE++FCKNCKLH HKFANCPTIECRYCHKRGHIL++CPTRPPRPPGHSHKPK SPK GSSSV+AAAT SDIT PSS
Subjt:  GIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882007.4e-7354.15Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMRNITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL-----------------
        MEKND+ARPISTILDG+NYITWAHQMR+     K   +VT    +IT+      V ET+ +D QYIERLEDWDSKNHQIITWL                 
Subjt:  MEKNDIARPISTILDGSNYITWAHQMRNITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL-----------------

Query:  ---------------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILF
                                                                             GL P+YESVRAALLHRNPLPSLDA VQ+ILF
Subjt:  ---------------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILF

Query:  EEKRIGIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPS
        EEKR+GIVS + S+VALA TH R  NE+ FCKNCKLHGHKFANCPTIECRYCHKRGHIL++CPTRPPRPPGHSHKPK S K+GSSSV+AAAT SDIT PS
Subjt:  EEKRIGIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPS

Query:  S
        S
Subjt:  S

A0A1S3BPL0 uncharacterized protein LOC1034918288.5e-7755.41Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL---
        MEK DIARPISTILDGSNYITWA+QMR              +IT+P+K T  V N S+  TE+++A +  ETT +D +YIERLEDWDSKNHQIITWL   
Subjt:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL---

Query:  ----------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRI
                                                                        GL P+YESVRAALLHRN LPSLDA VQ+ILFE+KR+
Subjt:  ----------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRI

Query:  GIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS
        G+VS +  +VALA TH R  NE++FCKNCKLH HKFANCPTIECRYCHKRGHIL++CPTRPPRPPGHSHKPK SPK GSSSV+AAAT SDIT PSS
Subjt:  GIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS

A0A5A7TPN5 Putative mitochondrial protein8.5e-7755.41Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL---
        MEK DIARPISTILDGSNYITWA+QMR              +IT+P+K T  V N S+  TE+++A +  ETT +D +YIERLEDWDSKNHQIITWL   
Subjt:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL---

Query:  ----------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRI
                                                                        GL P+YESVRAALLHRN LPSLDA VQ+ILFE+KR+
Subjt:  ----------------------------------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRI

Query:  GIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS
        G+VS +  +VALA TH R  NE++FCKNCKLH HKFANCPTIECRYCHKRGHIL++CPTRPPRPPGHSHKPK SPK GSSSV+AAAT SDIT PSS
Subjt:  GIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS

A0A5A7TXR0 Putative mitochondrial protein4.8e-7251.41Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAES----VKETTLKDAQYIERLEDWDSKNHQIITW
        MEKN +ARPISTILDG+NYITWAHQMR              +IT+PVK T  + N S+  TE+++A +    V E T++D QYIERLEDWDSKNHQIITW
Subjt:  MEKNDIARPISTILDGSNYITWAHQMR--------------NITRPVKNTTLVTNISEEITENDEAES----VKETTLKDAQYIERLEDWDSKNHQIITW

Query:  L--------------------------------------------------------------------------------------GLHPDYESVRAAL
        L                                                                                      GL  +YESVRAAL
Subjt:  L--------------------------------------------------------------------------------------GLHPDYESVRAAL

Query:  LHRNPLPSLDAIVQKILFEEKRIGIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKS
        LHRNPLPSLDA VQ+ILFEEKR+GIVS + S+VALA TH R  NE++FCKNCKLHGHKFANCPTIECRYC+KRGHIL++CPTRPPRPP HSHK K S K 
Subjt:  LHRNPLPSLDAIVQKILFEEKRIGIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKS

Query:  GSSSVIAAATPSDITTPSS
        GSSSV+AAAT SDIT PSS
Subjt:  GSSSVIAAATPSDITTPSS

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-7560.59Show/hide
Query:  MEKNDIARPISTILDGSNYITWAHQMRNITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL-----------------
        MEKND+ARPISTILDG+NYITWAHQMR+     K   +VT    +IT+      V ET+ +D QYIERLEDWDSKNHQIITWL                 
Subjt:  MEKNDIARPISTILDGSNYITWAHQMRNITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWL-----------------

Query:  -------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRIGIVSPMSSNVALAATHSRPTNESNFCK
                                             GL P+YESVRAALLHRNPLPSLDA VQ+ILFEEKR+GIVS + S+VALA TH R  NE+ FCK
Subjt:  -------------------------------------GLHPDYESVRAALLHRNPLPSLDAIVQKILFEEKRIGIVSPMSSNVALAATHSRPTNESNFCK

Query:  NCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS
        NCKLHGHKFANCPTIECRYCHKRGHIL++CPTRPPRPPGHSHKPK S K+GSSSV+AAAT SDIT PSS
Subjt:  NCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAATGATATCGCTCGTCCTATTAGCACAATTCTTGATGGCTCAAATTACATTACCTGGGCCCATCAAATGAGGAATATCACCCGACCTGTTAAAAACACTAC
TCTAGTGACGAACATTAGTGAGGAGATCACTGAGAATGATGAGGCAGAATCAGTAAAAGAGACTACTCTAAAGGATGCCCAATATATTGAACGTCTTGAGGATTGGGATA
GCAAAAATCATCAAATCATCACTTGGTTGGGACTCCATCCAGACTATGAATCAGTTCGTGCTGCTCTATTACATCGCAACCCTCTGCCATCTCTAGATGCTATCGTTCAG
AAAATCTTATTCGAGGAGAAAAGAATTGGCATTGTCTCTCCTATGTCTTCTAACGTCGCTCTTGCAGCCACTCATTCACGACCTACAAATGAGTCCAACTTCTGCAAAAA
TTGTAAACTTCATGGTCATAAGTTTGCTAACTGTCCTACCATTGAGTGTAGGTATTGTCACAAACGAGGTCATATCTTGGAAAGTTGTCCTACTCGCCCACCTCGCCCAC
CTGGTCACTCACACAAACCTAAGTCCTCTCCTAAATCTGGTTCTTCATCTGTTATTGCTGCTGCCACCCCATCTGACATCACCACACCTTCGAGTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAATGATATCGCTCGTCCTATTAGCACAATTCTTGATGGCTCAAATTACATTACCTGGGCCCATCAAATGAGGAATATCACCCGACCTGTTAAAAACACTAC
TCTAGTGACGAACATTAGTGAGGAGATCACTGAGAATGATGAGGCAGAATCAGTAAAAGAGACTACTCTAAAGGATGCCCAATATATTGAACGTCTTGAGGATTGGGATA
GCAAAAATCATCAAATCATCACTTGGTTGGGACTCCATCCAGACTATGAATCAGTTCGTGCTGCTCTATTACATCGCAACCCTCTGCCATCTCTAGATGCTATCGTTCAG
AAAATCTTATTCGAGGAGAAAAGAATTGGCATTGTCTCTCCTATGTCTTCTAACGTCGCTCTTGCAGCCACTCATTCACGACCTACAAATGAGTCCAACTTCTGCAAAAA
TTGTAAACTTCATGGTCATAAGTTTGCTAACTGTCCTACCATTGAGTGTAGGTATTGTCACAAACGAGGTCATATCTTGGAAAGTTGTCCTACTCGCCCACCTCGCCCAC
CTGGTCACTCACACAAACCTAAGTCCTCTCCTAAATCTGGTTCTTCATCTGTTATTGCTGCTGCCACCCCATCTGACATCACCACACCTTCGAGTTTTTAG
Protein sequenceShow/hide protein sequence
MEKNDIARPISTILDGSNYITWAHQMRNITRPVKNTTLVTNISEEITENDEAESVKETTLKDAQYIERLEDWDSKNHQIITWLGLHPDYESVRAALLHRNPLPSLDAIVQ
KILFEEKRIGIVSPMSSNVALAATHSRPTNESNFCKNCKLHGHKFANCPTIECRYCHKRGHILESCPTRPPRPPGHSHKPKSSPKSGSSSVIAAATPSDITTPSSF