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PI0020234 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020234
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:16597002..16598624
RNA-Seq ExpressionPI0020234
SyntenyPI0020234
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEW88685.1 hypothetical protein [Tanacetum cinerariifolium]9.5e-2043.15Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSRSIDTNFTTLKKLNIS----CDTVSKRGQSTVM-------VCEVCGVLGNPTEKC
        FYEGLL +DRK IDAAS GAL + TP+K   LIS MA++SQ FG+R  D    ++ ++N S     D+++   +  VM        C +C V+G+PT+ C
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSRSIDTNFTTLKKLNIS----CDTVSKRGQSTVM-------VCEVCGVLGNPTEKC

Query:  PEV----TKKVNAMGGF----KQMYGPYSNTYNVKWRDHPNMKWGN
        P +     +++NA+GGF    ++ Y P+SNTYN  WRDHPN  +G+
Subjt:  PEV----TKKVNAMGGF----KQMYGPYSNTYNVKWRDHPNMKWGN

KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-1943.8Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP
        FY GLL+ DR  +DAA+ GALAN  P++  +LIS MA++SQ FG+R      S+    + LK   ++  T ++   Q T   V  C VCG++G+P +KCP
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP

Query:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN
        EV +++N +    + Y PYSNTYN  WRD+P ++WGN
Subjt:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-1943.8Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP
        FY GLL+ DR  +DAA+ GALA+ TP +  +LI  MAE+SQNFG+R      S+    + LK   ++  T ++   Q T   V  C VCG++G P +KCP
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP

Query:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN
        +V + VN +    + Y P+ NTYN+ WRD+PN++WGN
Subjt:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN

XP_010247948.1 PREDICTED: uncharacterized protein LOC104590886 [Nelumbo nucifera]1.6e-1943.36Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR-------SIDTNFTTLKK-----LNISCDTVSKRGQSTVMVCEVCGVLGNPTEK
        FYEGLL +DR  ID AS G L N TP++  +LIS MA +SQ FG R       + + N ++L++      ++ C   +   Q  V  CE+C   G+PT+ 
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR-------SIDTNFTTLKK-----LNISCDTVSKRGQSTVMVCEVCGVLGNPTEK

Query:  CP----EVTKKVNAMGGFKQ-MYGPYSNTYNVKWRDHPNMKWG
        CP    E  ++ NA+GGF Q  Y PYSNTYN  WRDHPN+ +G
Subjt:  CP----EVTKKVNAMGGFKQ-MYGPYSNTYNVKWRDHPNMKWG

XP_038896676.1 uncharacterized protein LOC120084936 [Benincasa hispida]8.6e-2145.26Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSRSIDTNFTTLKKLN---------ISCDT-VSKRGQSTVMVCEVCGVLGNPTEKCP
        FY GLL L++ NIDAA+SGALA+  P + S LISTM E+SQNFG+RS     +   K++         IS  T V++ G   V  C  CG+  + +  CP
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSRSIDTNFTTLKKLN---------ISCDT-VSKRGQSTVMVCEVCGVLGNPTEKCP

Query:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN
        +   +VNA+GGF++ Y P+  TYN  W+DHPN KWG+
Subjt:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN

TrEMBL top hitse value%identityAlignment
A0A1S3CD34 uncharacterized protein LOC1034995002.3e-1942.65Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDTVSKRGQST---VMVCEVCGVLGNPTEKCPE
        FY GLL+ DR  +DAA+ GAL N TP++  +LIS MAE+SQ+FG+R      S+    + LK   ++  T+      T   V  C VCG++G+  +KCPE
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDTVSKRGQST---VMVCEVCGVLGNPTEKCPE

Query:  VTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN
        + + VN +    + Y P+ NTYN  WRD+PN++WGN
Subjt:  VTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN

A0A1U7ZI72 uncharacterized protein LOC1045908867.9e-2043.36Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR-------SIDTNFTTLKK-----LNISCDTVSKRGQSTVMVCEVCGVLGNPTEK
        FYEGLL +DR  ID AS G L N TP++  +LIS MA +SQ FG R       + + N ++L++      ++ C   +   Q  V  CE+C   G+PT+ 
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR-------SIDTNFTTLKK-----LNISCDTVSKRGQSTVMVCEVCGVLGNPTEK

Query:  CP----EVTKKVNAMGGFKQ-MYGPYSNTYNVKWRDHPNMKWG
        CP    E  ++ NA+GGF Q  Y PYSNTYN  WRDHPN+ +G
Subjt:  CP----EVTKKVNAMGGFKQ-MYGPYSNTYNVKWRDHPNMKWG

A0A5A7SQH8 Retrotransposon gag protein7.9e-2043.8Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP
        FY GLL+ DR  +DAA+ GALA+ TP +  +LI  MAE+SQNFG+R      S+    + LK   ++  T ++   Q T   V  C VCG++G P +KCP
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP

Query:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN
        +V + VN +    + Y P+ NTYN+ WRD+PN++WGN
Subjt:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN

A0A5A7SRF5 Retrotransposon gag protein6.0e-2043.8Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP
        FY GLL+ DR  +DAA+ GALAN  P++  +LIS MA++SQ FG+R      S+    + LK   ++  T ++   Q T   V  C VCG++G+P +KCP
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP

Query:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN
        EV +++N +    + Y PYSNTYN  WRD+P ++WGN
Subjt:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN

A0A5A7ULC7 Retrotransposon gag protein8.7e-1943.07Show/hide
Query:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP
        FY GLL+ D+  +DAA+ GALA+ TP +  +LIS MAE+SQ+FG+R      S+    + +K   ++  T ++   Q T   V  C V G +G+P +KCP
Subjt:  FYEGLLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSR------SIDTNFTTLKKLNISCDT-VSKRGQST---VMVCEVCGVLGNPTEKCP

Query:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN
        EV + VN +    Q Y P+ NTYN  WRD+PN++WGN
Subjt:  EVTKKVNAMGGFKQMYGPYSNTYNVKWRDHPNMKWGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGATGTGCGACTTGGGACGAAGATAGACGAACAGAGACGAAAGACTTGGTTTGCACGGAATGGAGGCAGACTGTTCGTGCAGAACGGCTCGATCCAGATGGCGT
TAGCTTGTGTGGAACGCAGACAGAGGAGCTCGACTTTCCAAGGCTGAGCGACGTGCAACTTGGGTTGGAACCGAATGAACGAAGACAGGACGCGGCTTGCGAAATATGGC
GTGGACGACAGCTTCGCGAACGAAGGTTCGACTTCGTCTGGACAATGGTCGACGGTGGAAGACGAACGACACGGAGGAGCTCCTTTAGGCGACTAGGGTTTTATGAAGGC
TTGTTGGCTTTAGATCGTAAAAACATTGATGCAGCCTCCAGTGGTGCTCTAGCCAACAATACTCCATCTAAAGAAAGTGATCTCATTTCTACAATGGCAGAGAGCTCTCA
AAACTTTGGGAGTAGATCAATCGACACGAACTTTACGACATTAAAAAAGCTTAACATCTCTTGTGACACAGTTAGCAAAAGAGGCCAATCAACAGTTATGGTGTGCGAAG
TATGTGGAGTGCTCGGAAATCCTACTGAAAAGTGCCCCGAGGTCACAAAAAAGGTTAATGCAATGGGAGGTTTCAAGCAAATGTATGGTCCCTATAGTAACACATATAAC
GTCAAATGGAGAGATCATCCTAACATGAAATGGGGAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGATGTGCGACTTGGGACGAAGATAGACGAACAGAGACGAAAGACTTGGTTTGCACGGAATGGAGGCAGACTGTTCGTGCAGAACGGCTCGATCCAGATGGCGT
TAGCTTGTGTGGAACGCAGACAGAGGAGCTCGACTTTCCAAGGCTGAGCGACGTGCAACTTGGGTTGGAACCGAATGAACGAAGACAGGACGCGGCTTGCGAAATATGGC
GTGGACGACAGCTTCGCGAACGAAGGTTCGACTTCGTCTGGACAATGGTCGACGGTGGAAGACGAACGACACGGAGGAGCTCCTTTAGGCGACTAGGGTTTTATGAAGGC
TTGTTGGCTTTAGATCGTAAAAACATTGATGCAGCCTCCAGTGGTGCTCTAGCCAACAATACTCCATCTAAAGAAAGTGATCTCATTTCTACAATGGCAGAGAGCTCTCA
AAACTTTGGGAGTAGATCAATCGACACGAACTTTACGACATTAAAAAAGCTTAACATCTCTTGTGACACAGTTAGCAAAAGAGGCCAATCAACAGTTATGGTGTGCGAAG
TATGTGGAGTGCTCGGAAATCCTACTGAAAAGTGCCCCGAGGTCACAAAAAAGGTTAATGCAATGGGAGGTTTCAAGCAAATGTATGGTCCCTATAGTAACACATATAAC
GTCAAATGGAGAGATCATCCTAACATGAAATGGGGAAATTAA
Protein sequenceShow/hide protein sequence
MARCATWDEDRRTETKDLVCTEWRQTVRAERLDPDGVSLCGTQTEELDFPRLSDVQLGLEPNERRQDAACEIWRGRQLRERRFDFVWTMVDGGRRTTRRSSFRRLGFYEG
LLALDRKNIDAASSGALANNTPSKESDLISTMAESSQNFGSRSIDTNFTTLKKLNISCDTVSKRGQSTVMVCEVCGVLGNPTEKCPEVTKKVNAMGGFKQMYGPYSNTYN
VKWRDHPNMKWGN