; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0020244 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020244
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr08:2394602..2395890
RNA-Seq ExpressionPI0020244
SyntenyPI0020244
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025737.1 uncharacterized protein E6C27_scaffold653G00220 [Cucumis melo var. makuwa]2.9e-3640.34Show/hide
Query:  LAPLRPSRPPPFKEQKVITTAAGCCKLPSNVPPTRL------MESPSTVRRMCTSGNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLA
        LA  +P+     ++++ ITT  G  K+P N+P   +       E      +      +++  V +RG  F +SPT IN++LG       S   PS + LA
Subjt:  LAPLRPSRPPPFKEQKVITTAAGCCKLPSNVPPTRL------MESPSTVRRMCTSGNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLA

Query:  FELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQH
          L GGT+  WP +G +P I LS+ YAILHKIGIANW+ S+HAS+VS AL   +YQI  D  +DT              F +KIPI  P+L    L++ +
Subjt:  FELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQH

Query:  PSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP
         ++LT  D     PKTLTLSYRLFQGSH PDI   V P
Subjt:  PSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP

KAA0066406.1 uncharacterized protein E6C27_scaffold21G004820 [Cucumis melo var. makuwa]2.0e-3737.28Show/hide
Query:  TYVPKDSSSGPSTCPCAPGPSVVPLAPLRPSRPPPFKEQKV---ITTAAGCCKLPSNVPPTRL--------------------MESPSTVRRMCTS----
        T +P +    P+  P AP     P +P  P +PP  K Q+    +TT  G  K+P+NVP   +                      S   +R    +    
Subjt:  TYVPKDSSSGPSTCPCAPGPSVVPLAPLRPSRPPPFKEQKV---ITTAAGCCKLPSNVPPTRL--------------------MESPSTVRRMCTS----

Query:  ----GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALA
             ++++  V +RG  F +SP  IN++LG +     S+  P+TE LA  L GGT+  WP +G +P   LSV YAILHKIGIANW+PS+HAS++S AL 
Subjt:  ----GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALA

Query:  HLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP
          +YQI     +DT              F +K+PI FP+L    L++ +  +LT +DAP   PKT+ LSYRLFQGSH PDI H V P
Subjt:  HLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP

TYK00879.1 uncharacterized protein E5676_scaffold602G00380 [Cucumis melo var. makuwa]2.0e-3737.28Show/hide
Query:  TYVPKDSSSGPSTCPCAPGPSVVPLAPLRPSRPPPFKEQKV---ITTAAGCCKLPSNVPPTRL--------------------MESPSTVRRMCTS----
        T +P +    P+  P AP     P +P  P +PP  K Q+    +TT  G  K+P+NVP   +                      S   +R    +    
Subjt:  TYVPKDSSSGPSTCPCAPGPSVVPLAPLRPSRPPPFKEQKV---ITTAAGCCKLPSNVPPTRL--------------------MESPSTVRRMCTS----

Query:  ----GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALA
             ++++  V +RG  F +SP  IN++LG +     S+  P+TE LA  L GGT+  WP +G +P   LSV YAILHKIGIANW+PS+HAS++S AL 
Subjt:  ----GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALA

Query:  HLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP
          +YQI     +DT              F +K+PI FP+L    L++ +  +LT +DAP   PKT+ LSYRLFQGSH PDI H V P
Subjt:  HLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP

TYK06167.1 uncharacterized protein E5676_scaffold287G00200 [Cucumis melo var. makuwa]2.0e-3741.38Show/hide
Query:  LAPLRPSRPPPFKEQKVITTAAGCCKLPSNVPPTRLMESPSTVRRMCTSGNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGG
        LA  +P+     ++++ ITT  G  K+P N+P   +              N+ +  V +RG  F +SPT IN++LG       S   PS + LA  L GG
Subjt:  LAPLRPSRPPPFKEQKVITTAAGCCKLPSNVPPTRLMESPSTVRRMCTSGNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGG

Query:  TVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTL
        T+  WP +G +P I LS+ YAILHKIGIANW+ S+HAS+VS AL   +YQI  D  +DT              F +KIPI  P+L    L++ + ++LT 
Subjt:  TVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTL

Query:  NDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP
         D     PKTLTLSYRLFQGSH PDI   V P
Subjt:  NDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP

XP_008462856.1 PREDICTED: uncharacterized protein LOC103501137 [Cucumis melo]2.2e-3642.15Show/hide
Query:  ITTAAGCCKLPSNVPPTRLMESPSTVRRMCTS--------GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADG
        +T  AG  K  SNV P      P  +R    +         ++++  V +RG  F +SP  IN++LG +     S+  P+TE LA  L GGT+  WP +G
Subjt:  ITTAAGCCKLPSNVPPTRLMESPSTVRRMCTS--------GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADG

Query:  QLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPK
         +P   LSV YAILHKIGIANW+PS+HAS++S AL   +YQI     +DT              F +K+PI FP+L    L++ +  +LT +DAP   PK
Subjt:  QLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPK

Query:  TLTLSYRLFQGSHTPDIPHSVRP
        T+ LSYRLFQGSH PDI H V P
Subjt:  TLTLSYRLFQGSHTPDIPHSVRP

TrEMBL top hitse value%identityAlignment
A0A1S3CHW3 uncharacterized protein LOC1035011371.1e-3642.15Show/hide
Query:  ITTAAGCCKLPSNVPPTRLMESPSTVRRMCTS--------GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADG
        +T  AG  K  SNV P      P  +R    +         ++++  V +RG  F +SP  IN++LG +     S+  P+TE LA  L GGT+  WP +G
Subjt:  ITTAAGCCKLPSNVPPTRLMESPSTVRRMCTS--------GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADG

Query:  QLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPK
         +P   LSV YAILHKIGIANW+PS+HAS++S AL   +YQI     +DT              F +K+PI FP+L    L++ +  +LT +DAP   PK
Subjt:  QLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPK

Query:  TLTLSYRLFQGSHTPDIPHSVRP
        T+ LSYRLFQGSH PDI H V P
Subjt:  TLTLSYRLFQGSHTPDIPHSVRP

A0A5A7SM05 Uncharacterized protein1.4e-3640.34Show/hide
Query:  LAPLRPSRPPPFKEQKVITTAAGCCKLPSNVPPTRL------MESPSTVRRMCTSGNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLA
        LA  +P+     ++++ ITT  G  K+P N+P   +       E      +      +++  V +RG  F +SPT IN++LG       S   PS + LA
Subjt:  LAPLRPSRPPPFKEQKVITTAAGCCKLPSNVPPTRL------MESPSTVRRMCTSGNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLA

Query:  FELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQH
          L GGT+  WP +G +P I LS+ YAILHKIGIANW+ S+HAS+VS AL   +YQI  D  +DT              F +KIPI  P+L    L++ +
Subjt:  FELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQH

Query:  PSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP
         ++LT  D     PKTLTLSYRLFQGSH PDI   V P
Subjt:  PSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP

A0A5A7VJ79 Uncharacterized protein9.7e-3837.28Show/hide
Query:  TYVPKDSSSGPSTCPCAPGPSVVPLAPLRPSRPPPFKEQKV---ITTAAGCCKLPSNVPPTRL--------------------MESPSTVRRMCTS----
        T +P +    P+  P AP     P +P  P +PP  K Q+    +TT  G  K+P+NVP   +                      S   +R    +    
Subjt:  TYVPKDSSSGPSTCPCAPGPSVVPLAPLRPSRPPPFKEQKV---ITTAAGCCKLPSNVPPTRL--------------------MESPSTVRRMCTS----

Query:  ----GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALA
             ++++  V +RG  F +SP  IN++LG +     S+  P+TE LA  L GGT+  WP +G +P   LSV YAILHKIGIANW+PS+HAS++S AL 
Subjt:  ----GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALA

Query:  HLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP
          +YQI     +DT              F +K+PI FP+L    L++ +  +LT +DAP   PKT+ LSYRLFQGSH PDI H V P
Subjt:  HLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP

A0A5D3BS10 Uncharacterized protein9.7e-3837.28Show/hide
Query:  TYVPKDSSSGPSTCPCAPGPSVVPLAPLRPSRPPPFKEQKV---ITTAAGCCKLPSNVPPTRL--------------------MESPSTVRRMCTS----
        T +P +    P+  P AP     P +P  P +PP  K Q+    +TT  G  K+P+NVP   +                      S   +R    +    
Subjt:  TYVPKDSSSGPSTCPCAPGPSVVPLAPLRPSRPPPFKEQKV---ITTAAGCCKLPSNVPPTRL--------------------MESPSTVRRMCTS----

Query:  ----GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALA
             ++++  V +RG  F +SP  IN++LG +     S+  P+TE LA  L GGT+  WP +G +P   LSV YAILHKIGIANW+PS+HAS++S AL 
Subjt:  ----GNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALA

Query:  HLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP
          +YQI     +DT              F +K+PI FP+L    L++ +  +LT +DAP   PKT+ LSYRLFQGSH PDI H V P
Subjt:  HLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP

A0A5D3C2X6 Uncharacterized protein9.7e-3841.38Show/hide
Query:  LAPLRPSRPPPFKEQKVITTAAGCCKLPSNVPPTRLMESPSTVRRMCTSGNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGG
        LA  +P+     ++++ ITT  G  K+P N+P   +              N+ +  V +RG  F +SPT IN++LG       S   PS + LA  L GG
Subjt:  LAPLRPSRPPPFKEQKVITTAAGCCKLPSNVPPTRLMESPSTVRRMCTSGNMSFNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGG

Query:  TVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTL
        T+  WP +G +P I LS+ YAILHKIGIANW+ S+HAS+VS AL   +YQI  D  +DT              F +KIPI  P+L    L++ + ++LT 
Subjt:  TVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDT--------------FDIKIPICFPQLLCGFLVNQHPSMLTL

Query:  NDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP
         D     PKTLTLSYRLFQGSH PDI   V P
Subjt:  NDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTGATTCCTCCGATGAGGACAATGTTGCAATTGTGTCCTTACTTTGGCGGTCCAATCAAGCTCCAAGTTCCTCTTCTCTGCATGGTAAAGCCACCTATGTGCC
CAAGGATAGTTCCAGTGGTCCTTCGACCTGCCCTTGTGCTCCTGGCCCTTCGGTTGTTCCTTTGGCGCCTCTTCGTCCTTCTCGTCCTCCGCCATTTAAAGAGCAGAAAG
TTATCACCACTGCTGCTGGTTGTTGCAAGCTTCCTTCGAATGTTCCTCCGACTCGATTGATGGAATCTCCTTCCACTGTGAGGAGAATGTGCACAAGTGGAAATATGTCA
TTCAATGTCGTGTTTGTTCGTGGCTTGTGCTTTCATGTCTCTCCTACATCCATCAATCAGTATCTGGGTTTATCTTCTTCTGAGGTTGCTTCTGCCCCAGTGCCTTCCAC
AGAGACTCTGGCTTTTGAATTGATTGGGGGGACTGTCCATGTATGGCCTGCCGATGGTCAACTACCGACTATCTTTTTAAGTGTGAATTATGCCATTCTTCACAAGATTG
GCATTGCCAACTGGTATCCCTCCACTCATGCTTCCACAGTCTCAACGGCTCTGGCTCACTTAATCTACCAGATTGGCACCGACTCTTCTATTGATACCTTCGACATTAAG
ATTCCTATCTGCTTTCCCCAACTACTGTGTGGTTTTTTGGTCAACCAACATCCCTCTATGCTGACCTTGAATGATGCTCCTAGAGGCCCTCCAAAGACCCTCACTCTCAG
CTACCGGCTCTTTCAAGGCTCTCACACTCCTGACATTCCCCACTCTGTGCGCCCTCCTAGGTCTGATCTTCCTGATCTTCTGACTAGGGTTCATATGCCTAATGTTGGGA
TTCTTCTTCCGCCTACTTTAGTCTTAAGTATTCTTCGCCTTCTTACAGATGAGGCAGAGCTGGAAAAAGAGGAGGAAGAAGATGATGGGGCAAAACTGGACGAAGAGGAG
GAAGAAGATGATGGGGCAAAGCTAGAAAAAGTGGTGGAAGAGGAAGAAGATGAAGATGAAAGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTGATTCCTCCGATGAGGACAATGTTGCAATTGTGTCCTTACTTTGGCGGTCCAATCAAGCTCCAAGTTCCTCTTCTCTGCATGGTAAAGCCACCTATGTGCC
CAAGGATAGTTCCAGTGGTCCTTCGACCTGCCCTTGTGCTCCTGGCCCTTCGGTTGTTCCTTTGGCGCCTCTTCGTCCTTCTCGTCCTCCGCCATTTAAAGAGCAGAAAG
TTATCACCACTGCTGCTGGTTGTTGCAAGCTTCCTTCGAATGTTCCTCCGACTCGATTGATGGAATCTCCTTCCACTGTGAGGAGAATGTGCACAAGTGGAAATATGTCA
TTCAATGTCGTGTTTGTTCGTGGCTTGTGCTTTCATGTCTCTCCTACATCCATCAATCAGTATCTGGGTTTATCTTCTTCTGAGGTTGCTTCTGCCCCAGTGCCTTCCAC
AGAGACTCTGGCTTTTGAATTGATTGGGGGGACTGTCCATGTATGGCCTGCCGATGGTCAACTACCGACTATCTTTTTAAGTGTGAATTATGCCATTCTTCACAAGATTG
GCATTGCCAACTGGTATCCCTCCACTCATGCTTCCACAGTCTCAACGGCTCTGGCTCACTTAATCTACCAGATTGGCACCGACTCTTCTATTGATACCTTCGACATTAAG
ATTCCTATCTGCTTTCCCCAACTACTGTGTGGTTTTTTGGTCAACCAACATCCCTCTATGCTGACCTTGAATGATGCTCCTAGAGGCCCTCCAAAGACCCTCACTCTCAG
CTACCGGCTCTTTCAAGGCTCTCACACTCCTGACATTCCCCACTCTGTGCGCCCTCCTAGGTCTGATCTTCCTGATCTTCTGACTAGGGTTCATATGCCTAATGTTGGGA
TTCTTCTTCCGCCTACTTTAGTCTTAAGTATTCTTCGCCTTCTTACAGATGAGGCAGAGCTGGAAAAAGAGGAGGAAGAAGATGATGGGGCAAAACTGGACGAAGAGGAG
GAAGAAGATGATGGGGCAAAGCTAGAAAAAGTGGTGGAAGAGGAAGAAGATGAAGATGAAAGAAGATGA
Protein sequenceShow/hide protein sequence
MVSDSSDEDNVAIVSLLWRSNQAPSSSSLHGKATYVPKDSSSGPSTCPCAPGPSVVPLAPLRPSRPPPFKEQKVITTAAGCCKLPSNVPPTRLMESPSTVRRMCTSGNMS
FNVVFVRGLCFHVSPTSINQYLGLSSSEVASAPVPSTETLAFELIGGTVHVWPADGQLPTIFLSVNYAILHKIGIANWYPSTHASTVSTALAHLIYQIGTDSSIDTFDIK
IPICFPQLLCGFLVNQHPSMLTLNDAPRGPPKTLTLSYRLFQGSHTPDIPHSVRPPRSDLPDLLTRVHMPNVGILLPPTLVLSILRLLTDEAELEKEEEEDDGAKLDEEE
EEDDGAKLEKVVEEEEDEDERR