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PI0020272 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020272
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionlight-regulated protein-like
Genome locationchr11:1404634..1406010
RNA-Seq ExpressionPI0020272
SyntenyPI0020272
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039854.1 light-regulated protein-like [Cucumis melo var. makuwa]1.4e-6189.44Show/hide
Query:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
        MQLQAALSIAPPSCS LPPTAK MAFSI TRS+ R       + TLKAKASAVGQ+PSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
Subjt:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS

Query:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

NP_001267523.1 light-regulated protein-like [Cucumis sativus]2.8e-6290.14Show/hide
Query:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
        MQ QAALSIA PSCS LPPTAKSMAFSIPTRSM R       + TLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG+
Subjt:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS

Query:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_008459906.1 PREDICTED: light-regulated protein-like [Cucumis melo]1.8e-6189.44Show/hide
Query:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
        MQLQAALSIAPPSCS LPPTAK MAFSI TRS+ R       + TLKAKASAVGQ+PSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
Subjt:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS

Query:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_022953556.1 light-regulated protein-like [Cucurbita moschata]1.0e-6188.11Show/hide
Query:  MQLQAALSIA-PPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A P SC  LPPT K MAFSIP+RSMRRHPTSQT R  LKAKASAVGQDPSTVDYSSMSSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIA-PPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  SSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_038906788.1 light-regulated protein, chloroplastic-like [Benincasa hispida]4.3e-6389.51Show/hide
Query:  MQLQAALSIA-PPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAALS+A P SCS LPPTAKSMAFS+ +RS+ RHPTSQTQR  LKAKASAVGQDPSTVDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK 
Subjt:  MQLQAALSIA-PPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  SSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SVTEPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

TrEMBL top hitse value%identityAlignment
A0A1S3CBQ8 light-regulated protein-like8.6e-6289.44Show/hide
Query:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
        MQLQAALSIAPPSCS LPPTAK MAFSI TRS+ R       + TLKAKASAVGQ+PSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
Subjt:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS

Query:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A5D3DLY7 Light-regulated protein-like6.6e-6289.44Show/hide
Query:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
        MQLQAALSIAPPSCS LPPTAK MAFSI TRS+ R       + TLKAKASAVGQ+PSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
Subjt:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS

Query:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1GNA5 light-regulated protein-like5.1e-6288.11Show/hide
Query:  MQLQAALSIA-PPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A P SC  LPPT K MAFSIP+RSMRRHPTSQT R  LKAKASAVGQDPSTVDYSSMSSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIA-PPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  SSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1JSC1 light-regulated protein, chloroplastic-like1.9e-6186.71Show/hide
Query:  MQLQAALSIA-PPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A P SC  LPPT K MAFS+P+RSMRRHPTSQT R  LKAKASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIA-PPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  SSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

Q39636 CR9 protein1.3e-6290.14Show/hide
Query:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
        MQ QAALSIA PSCS LPPTAKSMAFSIPTRSM R       + TLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG+
Subjt:  MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS

Query:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  SVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic4.9e-2247.41Show/hide
Query:  LQAALSIAPPSCSFLPPTAK--SMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS
        +Q A S      + LP   K  S+    P R   R          ++A A+AV  + + VDYSS  SVFP EACD +GGEAC+V+MYPE KL   A    
Subjt:  LQAALSIAPPSCSFLPPTAK--SMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGS

Query:  S--VTEPVEREYLQYDSPKTVFPAEACDDLGGEFC
        S    E V+R+YL YD P TVFP EACDDLGGEFC
Subjt:  S--VTEPVEREYLQYDSPKTVFPAEACDDLGGEFC

Q96500 Light-regulated protein 1, chloroplastic6.2e-2545.83Show/hide
Query:  LQAALSIAPPSCSFLPPTAKS--MAFSIPTRSMRRHPTSQTQRTTLK----AKASAVGQDPSTVDY-SSMSSVFPAEACDTVGGEACDVEMYPEVKLKPE
        +Q AL I P     LP +  S  + F +P      H T  ++ ++L+    + +S++  DP+TVDY SS+ SVFPAEAC+ + G AC  ++YPEVKL  +
Subjt:  LQAALSIAPPSCSFLPPTAKS--MAFSIPTRSMRRHPTSQTQRTTLK----AKASAVGQDPSTVDY-SSMSSVFPAEACDTVGGEACDVEMYPEVKLKPE

Query:  AKKGSSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
               +EPV+REY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  AKKGSSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK

Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like4.4e-2645.83Show/hide
Query:  LQAALSIAPPSCSFLPPTAKS--MAFSIPTRSMRRHPTSQTQRTTLK----AKASAVGQDPSTVDY-SSMSSVFPAEACDTVGGEACDVEMYPEVKLKPE
        +Q AL I P     LP +  S  + F +P      H T  ++ ++L+    + +S++  DP+TVDY SS+ SVFPAEAC+ + G AC  ++YPEVKL  +
Subjt:  LQAALSIAPPSCSFLPPTAKS--MAFSIPTRSMRRHPTSQTQRTTLK----AKASAVGQDPSTVDY-SSMSSVFPAEACDTVGGEACDVEMYPEVKLKPE

Query:  AKKGSSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
               +EPV+REY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  AKKGSSVTEPVEREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTGCAGGCGGCTCTTTCCATAGCACCTCCATCATGCTCCTTCCTCCCACCAACAGCCAAATCAATGGCCTTCTCAATCCCAACTAGGTCCATGCGAAGGCACCC
CACTTCCCAAACTCAACGTACCACCCTAAAAGCAAAGGCAAGTGCAGTAGGACAAGACCCTTCAACTGTTGACTACAGCTCCATGTCCTCTGTTTTTCCAGCAGAGGCTT
GTGACACTGTTGGAGGTGAAGCTTGTGATGTGGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAAAAAGGGAGTAGTGTTACAGAGCCAGTTGAGAGAGAGTAT
CTACAATATGACAGTCCTAAGACAGTCTTTCCGGCGGAGGCTTGTGATGATTTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG
mRNA sequenceShow/hide mRNA sequence
TGAGAGATAAAGAGACAAGAGCTGTAATAATAATATATCAATTCAAATCTACACAACCACTCGTTTCTCAAGGAGAAAAAAAGTTGCTTTCATCTCTACATTATTGATTT
AAAACCTTATCCAGTCACGAGATATCTTGCCAACTTTATCTGTTTAACCTTATAAATCTGAATTCTACTCTAAAGATACATCCAAGCACCAACTTCGCGGCAGACCGAAC
GGAACCATTGTTCATCATGCAGTTGCAGGCGGCTCTTTCCATAGCACCTCCATCATGCTCCTTCCTCCCACCAACAGCCAAATCAATGGCCTTCTCAATCCCAACTAGGT
CCATGCGAAGGCACCCCACTTCCCAAACTCAACGTACCACCCTAAAAGCAAAGGCAAGTGCAGTAGGACAAGACCCTTCAACTGTTGACTACAGCTCCATGTCCTCTGTT
TTTCCAGCAGAGGCTTGTGACACTGTTGGAGGTGAAGCTTGTGATGTGGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAAAAAGGGAGTAGTGTTACAGAGCC
AGTTGAGAGAGAGTATCTACAATATGACAGTCCTAAGACAGTCTTTCCGGCGGAGGCTTGTGATGATTTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAAGGAGTTT
ACTAGAAAAAAATCTTATTGGGAATTAGTACATATAAACAAGGGTTGAGCTTAGGGTCAACTTTCAGTTGTTTTTTTAATTTTCTTTTCTCCTTTGCTGACTTTCTCTTA
TGCCTGTAAATGATTAATAGACTACAAAGTTCTTCAATGCTGATCAATACTCGATATTCTGAAAGAACATAAAGACCATCTCTTCTAAGATAAATACAAGCTATGGTAAT
AGAACAACAGAGGGAACTTTTTTTGTGATCGTCTGGAAGGCAATAATTTTCCATAAACAAACTGCTTGTTCGCTTAGTGAGAAAATAGAAAGAATTTCAAGCTGTTTCAA
GATTGACATATCAAAAGCTTGATTGATTTATAATATACAGACAACAATGAATCACCCATCATAAAAGTTATCTTATATAGACACTAAGATTATACAATAGAGAAATTGAT
ATCAGAAGATTGTTCTTTAACAACAAATACTAATATATCAACAGTAAAATAGCATAGAAGTCCTAAAAAG
Protein sequenceShow/hide protein sequence
MQLQAALSIAPPSCSFLPPTAKSMAFSIPTRSMRRHPTSQTQRTTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGSSVTEPVEREY
LQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY