; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0020280 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020280
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:12436855..12437091
RNA-Seq ExpressionPI0020280
SyntenyPI0020280
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-2669.23Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WT+EEE TL+ECL+ELV +GGWK+DNGTFRPGYLA ++R+M EKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

KAA0045008.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-2669.23Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WT+EEE TL+ECL+ELV +GGWK+DNGTFRPGYLA ++R+M EKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

KAA0054186.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-2670.51Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WTKEEE TL+ECL+ELV +GGWK+DNGTFRPGYL  ++R+MTEKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

KAA0065929.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-2670.51Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WTKEEE TL+ECL+ELV +GGWK+DNGTFRPGYLA ++R+M EKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

TYK20986.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2671.79Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WTKEEE TL+ECL+ELV +GGWK+DNGTFRPGYLA ++RIM EKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

TrEMBL top hitse value%identityAlignment
A0A5A7TQ37 Retrotransposon protein1.9e-2669.23Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WT+EEE TL+ECL+ELV +GGWK+DNGTFRPGYLA ++R+M EKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

A0A5A7UIT2 Retrotransposon protein8.5e-2770.51Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WTKEEE TL+ECL+ELV +GGWK+DNGTFRPGYL  ++R+MTEKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

A0A5A7VKT2 Retrotransposon protein1.4e-2670.51Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WTKEEE TL+ECL+ELV +GGWK+DNGTFRPGYLA ++R+M EKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

A0A5D3CWL2 Retrotransposon protein3.2e-2669.23Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WT+EEE TL+ECL+ELV +GGWK+DNGTFRPGYLA ++R+M EKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

A0A5D3DBP2 Retrotransposon protein6.5e-2771.79Show/hide
Query:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF
        M++S+RAP+H WTKEEE TL+ECL+ELV +GGWK+DNGTFRPGYLA ++RIM EKL GC ++ TT IDCRI TLKRTF
Subjt:  MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCGTCGAGGGCCCCGAAGCATACTTGGACCAAAGAAGAAGAGTCAACCCTCATGGAATGTCTGGTAGAGTTGGTCTTTGTCGGGGGATGGAAAACGGACAA
CGGCACATTCAGACCCGGTTACTTGGCAATGATTCTGAGAATAATGACAGAAAAGCTCTCAGGGTGTACCATCCAGGGGACCACTACTATTGATTGTCGGATCAATACGC
TTAAAAGAACCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCGTCGAGGGCCCCGAAGCATACTTGGACCAAAGAAGAAGAGTCAACCCTCATGGAATGTCTGGTAGAGTTGGTCTTTGTCGGGGGATGGAAAACGGACAA
CGGCACATTCAGACCCGGTTACTTGGCAATGATTCTGAGAATAATGACAGAAAAGCTCTCAGGGTGTACCATCCAGGGGACCACTACTATTGATTGTCGGATCAATACGC
TTAAAAGAACCTTTTAG
Protein sequenceShow/hide protein sequence
MASSSRAPKHTWTKEEESTLMECLVELVFVGGWKTDNGTFRPGYLAMILRIMTEKLSGCTIQGTTTIDCRINTLKRTF