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PI0020298 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020298
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:23623792..23624298
RNA-Seq ExpressionPI0020298
SyntenyPI0020298
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064182.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.5e-1038.04Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPK
        MD SK L DN DEFKK VSEFK L + L D+NE +                  Y ++S+ TDAI+SA+RT+E+E   ++KE  + +GLFVK   + NQ K
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPK

Query:  GGKQQHSYENKPKEKIKCKYCKKK--------GHLIKDCFILKRKNQ-EKEKESKGKQSEASI
              S + K K K K KY   K         HL ++   L   +  E E + KG  SEA++
Subjt:  GGKQQHSYENKPKEKIKCKYCKKK--------GHLIKDCFILKRKNQ-EKEKESKGKQSEASI

KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-1043.96Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVK
        MD +K L +N  EFKK+ S+FKELG+ +GD+NE+F                  YGR  I T  +ISA+RT+E++L S +++QS+ EGLF K
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVK

TYK23793.1 F15O4.39 [Cucumis melo var. makuwa]2.7e-1550.88Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAFYGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPKGGKQQHSYENKPKEKIKC
        MDSSK L +N DEFKKIVS F +LGE L               DAIIS L TKE+EL  TKKE  S EGLFVK   K +Q    KQ  +  +K K K++C
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAFYGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPKGGKQQHSYENKPKEKIKC

Query:  KYCKKKGHLIKDCF
          CKKK HL +DC+
Subjt:  KYCKKKGHLIKDCF

XP_038880322.1 uncharacterized protein LOC120071961 [Benincasa hispida]1.8e-1152.87Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEG
        MDS K L +N DEFK+IV EFK L E +GD+NEAF                  YGR S+  DAIISALRT+E+EL S KKEQ  +EG
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEG

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]1.0e-1438.1Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPK
        MD +K L DN +EFK + S+F+ +G+ +G++NEAF                  YGR  I T AIISA+  KE+EL  TKK+Q   EG F K N K     
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPK

Query:  GGKQQHSYENKPKEKIKCKYCKKKGHLIKDCFILKRKNQEKEKESKGKQSEASIVVGNYVFSDALAST
         G+   + E   ++ +K           KDC+ LKRK  ++ K   GKQ+EA++   + V+SDALA+T
Subjt:  GGKQQHSYENKPKEKIKCKYCKKKGHLIKDCFILKRKNQEKEKESKGKQSEASIVVGNYVFSDALAST

TrEMBL top hitse value%identityAlignment
A0A438GN18 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-0830.49Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPK
        M   + + DN D+F KIV E   +G  + D+++A                   YGR ++  + + SALR+KE+EL   KK+ S+ EGL ++     +  +
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPK

Query:  GGKQQHSYENKPKEKIKCKYCKKKGHLIKDCFILKRKNQEKEKESKGKQSEASIVVGNYVFSDA
          K + S  +K   K KC +C+K+GH  +DC   K K  E  KE+  ++  A++V   Y  ++A
Subjt:  GGKQQHSYENKPKEKIKCKYCKKKGHLIKDCFILKRKNQEKEKESKGKQSEASIVVGNYVFSDA

A0A5A7V734 Retrovirus-related Pol polyprotein from transposon TNT 1-947.3e-1138.04Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPK
        MD SK L DN DEFKK VSEFK L + L D+NE +                  Y ++S+ TDAI+SA+RT+E+E   ++KE  + +GLFVK   + NQ K
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPK

Query:  GGKQQHSYENKPKEKIKCKYCKKK--------GHLIKDCFILKRKNQ-EKEKESKGKQSEASI
              S + K K K K KY   K         HL ++   L   +  E E + KG  SEA++
Subjt:  GGKQQHSYENKPKEKIKCKYCKKK--------GHLIKDCFILKRKNQ-EKEKESKGKQSEASI

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-945.6e-1143.96Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVK
        MD +K L +N  EFKK+ S+FKELG+ +GD+NE+F                  YGR  I T  +ISA+RT+E++L S +++QS+ EGLF K
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVK

A0A5D3DJL2 F15O4.391.3e-1550.88Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAFYGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPKGGKQQHSYENKPKEKIKC
        MDSSK L +N DEFKKIVS F +LGE L               DAIIS L TKE+EL  TKKE  S EGLFVK   K +Q    KQ  +  +K K K++C
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAFYGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPKGGKQQHSYENKPKEKIKC

Query:  KYCKKKGHLIKDCF
          CKKK HL +DC+
Subjt:  KYCKKKGHLIKDCF

A0A6J1DGM8 uncharacterized protein LOC1110199003.1e-0953.33Show/hide
Query:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIEL
        MDSSK L DN D+FKK+ SEF  LGE +G +NEAF                  YGR SI TDAIISA++TKE+EL
Subjt:  MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAF------------------YGRNSINTDAIISALRTKEIEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCATCAAAATTATTGTTCGATAATTTTGATGAATTCAAGAAAATTGTTTCTGAATTCAAAGAGTTGGGGGAAACTCTAGGAGATGATAATGAAGCCTTTTATGG
AAGAAACTCTATAAATACAGATGCCATAATTTCAGCTTTGAGAACAAAAGAAATAGAGTTGATGTCTACCAAGAAAGAACAATCCAGCAGTGAAGGTTTGTTTGTGAAAA
GAAATTTTAAACCTAATCAACCTAAAGGTGGAAAGCAGCAACATTCTTATGAGAACAAGCCTAAAGAGAAAATCAAATGCAAGTACTGCAAGAAAAAGGGTCATCTTATC
AAAGATTGTTTCATTCTAAAAAGGAAGAATCAAGAAAAGGAGAAAGAATCAAAGGGAAAACAGTCTGAAGCATCTATTGTTGTAGGTAACTATGTCTTCTCTGATGCCCT
TGCCTCAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCATCAAAATTATTGTTCGATAATTTTGATGAATTCAAGAAAATTGTTTCTGAATTCAAAGAGTTGGGGGAAACTCTAGGAGATGATAATGAAGCCTTTTATGG
AAGAAACTCTATAAATACAGATGCCATAATTTCAGCTTTGAGAACAAAAGAAATAGAGTTGATGTCTACCAAGAAAGAACAATCCAGCAGTGAAGGTTTGTTTGTGAAAA
GAAATTTTAAACCTAATCAACCTAAAGGTGGAAAGCAGCAACATTCTTATGAGAACAAGCCTAAAGAGAAAATCAAATGCAAGTACTGCAAGAAAAAGGGTCATCTTATC
AAAGATTGTTTCATTCTAAAAAGGAAGAATCAAGAAAAGGAGAAAGAATCAAAGGGAAAACAGTCTGAAGCATCTATTGTTGTAGGTAACTATGTCTTCTCTGATGCCCT
TGCCTCAACTTAA
Protein sequenceShow/hide protein sequence
MDSSKLLFDNFDEFKKIVSEFKELGETLGDDNEAFYGRNSINTDAIISALRTKEIELMSTKKEQSSSEGLFVKRNFKPNQPKGGKQQHSYENKPKEKIKCKYCKKKGHLI
KDCFILKRKNQEKEKESKGKQSEASIVVGNYVFSDALAST