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PI0020308 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020308
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr02:18396633..18397235
RNA-Seq ExpressionPI0020308
SyntenyPI0020308
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060126.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.2e-1744.37Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNR-SYSSANYDTNPTSRRRESENGMSSGYPKVDKS
        MK+TA E+A +I  LKLDELFGSL TF++T  D+    A  TKQF+K+ R F KRL   G      R    ++    N +S RR S++G  +    V +S
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNR-SYSSANYDTNPTSRRRESENGMSSGYPKVDKS

Query:  FRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES
        FRC+EC GF       HYQ +CP +LKR+KK+  +TLS+ +S
Subjt:  FRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES

TYJ98295.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.7e-1641.45Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDK----SDSIALPTKQFTKIVRRFNKRLANYGALYSKNRSYSSANY--DTNPTSRRRESENGMSSGYP
        MK+T IE++ DI +LKLDELFGSL TF++ + ++     +SIAL TKQF+K+ R+F  +  N      K   +   N+    N  S RR S++G      
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDK----SDSIALPTKQFTKIVRRFNKRLANYGALYSKNRSYSSANY--DTNPTSRRRESENGMSSGYP

Query:  KVDKSFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNESVSNSN
         V +SFRC+EC  F       HYQAECP +L+R+KK   ATLS+ +S  + +
Subjt:  KVDKSFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNESVSNSN

TYK03068.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]4.7e-1645.07Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNR-SYSSANYDTNPTSRRRESENGMSSGYPKVDKS
        MK+TAIE+A DI  LKL ELFGSL TF++T+ D+    AL TKQF K+ R+F K L   G      R    ++    N  S +R S++G       V +S
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNR-SYSSANYDTNPTSRRRESENGMSSGYPKVDKS

Query:  FRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES
        FRC+EC GF       HYQAEC  +L+R+KK+  ATLS+ +S
Subjt:  FRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES

TYK08440.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]4.2e-1744.76Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNRSYSSANY--DTNPTSRRRESENGMSSGYPKVDK
        MK+TA E+A +I  LKLDELFGSL TF++T  D+    A  TKQF+K+ R F KRL   G    K   +   N+    N +S RR S++G  +    V +
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNRSYSSANY--DTNPTSRRRESENGMSSGYPKVDK

Query:  SFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES
        SFRC+EC GF       HYQ +CP +LKR+KK+  +TLS+ +S
Subjt:  SFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES

TYK29861.1 gag-pol polyprotein [Cucumis melo var. makuwa]9.1e-2038.86Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDK------------------------------SDSIALPTKQFTKIVRRFNKRLANYGALYSKN-RSY
        MK+T I++ANDIA +K+D+LFGSL TFKL + D                               +DSI L  KQ +K+  +FNK+  NYG+  +K+  S 
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDK------------------------------SDSIALPTKQFTKIVRRFNKRLANYGALYSKN-RSY

Query:  SSANYDTN-PTSRRRESENGMSSGYPKVDKSFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNESVSNSNSEKDGWSLLGRITND
        SS++++T  P +  R ++   +    +V   F+C+EC GFR      HY+AECP FLKRKKKSL  TLSN +S S+S+ E+   +LL  +  D
Subjt:  SSANYDTN-PTSRRRESENGMSSGYPKVDKSFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNESVSNSNSEKDGWSLLGRITND

TrEMBL top hitse value%identityAlignment
A0A5A7V0X1 Gag-pol polyprotein3.5e-1744.37Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNR-SYSSANYDTNPTSRRRESENGMSSGYPKVDKS
        MK+TA E+A +I  LKLDELFGSL TF++T  D+    A  TKQF+K+ R F KRL   G      R    ++    N +S RR S++G  +    V +S
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNR-SYSSANYDTNPTSRRRESENGMSSGYPKVDKS

Query:  FRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES
        FRC+EC GF       HYQ +CP +LKR+KK+  +TLS+ +S
Subjt:  FRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES

A0A5D3BIP9 Gag-pol polyprotein1.3e-1641.45Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDK----SDSIALPTKQFTKIVRRFNKRLANYGALYSKNRSYSSANY--DTNPTSRRRESENGMSSGYP
        MK+T IE++ DI +LKLDELFGSL TF++ + ++     +SIAL TKQF+K+ R+F  +  N      K   +   N+    N  S RR S++G      
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDK----SDSIALPTKQFTKIVRRFNKRLANYGALYSKNRSYSSANY--DTNPTSRRRESENGMSSGYP

Query:  KVDKSFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNESVSNSN
         V +SFRC+EC  F       HYQAECP +L+R+KK   ATLS+ +S  + +
Subjt:  KVDKSFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNESVSNSN

A0A5D3BVP5 Gag-proteinase polyprotein2.3e-1645.07Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNR-SYSSANYDTNPTSRRRESENGMSSGYPKVDKS
        MK+TAIE+A DI  LKL ELFGSL TF++T+ D+    AL TKQF K+ R+F K L   G      R    ++    N  S +R S++G       V +S
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNR-SYSSANYDTNPTSRRRESENGMSSGYPKVDKS

Query:  FRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES
        FRC+EC GF       HYQAEC  +L+R+KK+  ATLS+ +S
Subjt:  FRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES

A0A5D3CAS2 Gag-proteinase polyprotein2.0e-1744.76Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNRSYSSANY--DTNPTSRRRESENGMSSGYPKVDK
        MK+TA E+A +I  LKLDELFGSL TF++T  D+    A  TKQF+K+ R F KRL   G    K   +   N+    N +S RR S++G  +    V +
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNRSYSSANY--DTNPTSRRRESENGMSSGYPKVDK

Query:  SFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES
        SFRC+EC GF       HYQ +CP +LKR+KK+  +TLS+ +S
Subjt:  SFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNES

A0A5D3E2N4 Gag-pol polyprotein4.4e-2038.86Show/hide
Query:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDK------------------------------SDSIALPTKQFTKIVRRFNKRLANYGALYSKN-RSY
        MK+T I++ANDIA +K+D+LFGSL TFKL + D                               +DSI L  KQ +K+  +FNK+  NYG+  +K+  S 
Subjt:  MKITAIEKANDIAILKLDELFGSLHTFKLTVDDK------------------------------SDSIALPTKQFTKIVRRFNKRLANYGALYSKN-RSY

Query:  SSANYDTN-PTSRRRESENGMSSGYPKVDKSFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNESVSNSNSEKDGWSLLGRITND
        SS++++T  P +  R ++   +    +V   F+C+EC GFR      HY+AECP FLKRKKKSL  TLSN +S S+S+ E+   +LL  +  D
Subjt:  SSANYDTN-PTSRRRESENGMSSGYPKVDKSFRCQECGGFRHYQAKWHYQAECPNFLKRKKKSLTATLSNNESVSNSNSEKDGWSLLGRITND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTACTGCAATTGAAAAAGCAAATGATATCGCCATTTTAAAATTGGATGAGTTGTTCGGCTCCCTACACACATTTAAGTTAACAGTTGACGATAAGTCTGACTC
AATTGCTCTACCGACAAAACAATTCACGAAGATTGTTCGACGGTTTAATAAACGTCTTGCTAACTATGGAGCTCTGTATAGCAAAAATCGCAGCTATAGTAGTGCTAACT
ATGACACGAATCCTACAAGTAGGCGGAGAGAAAGTGAAAATGGTATGAGCAGCGGTTATCCTAAGGTGGACAAAAGTTTCAGATGTCAAGAGTGTGGGGGTTTTAGGCAT
TATCAAGCAAAGTGGCATTATCAAGCAGAGTGTCCAAACTTCCTAAAGAGGAAAAAGAAAAGTCTTACTGCAACGCTTTCTAATAATGAGTCGGTTTCGAATAGTAATAG
TGAAAAAGACGGTTGGTCCTTGTTAGGGCGTATTACGAATGATGTTGTTGTAAATGCTACGGTCCCTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTACTGCAATTGAAAAAGCAAATGATATCGCCATTTTAAAATTGGATGAGTTGTTCGGCTCCCTACACACATTTAAGTTAACAGTTGACGATAAGTCTGACTC
AATTGCTCTACCGACAAAACAATTCACGAAGATTGTTCGACGGTTTAATAAACGTCTTGCTAACTATGGAGCTCTGTATAGCAAAAATCGCAGCTATAGTAGTGCTAACT
ATGACACGAATCCTACAAGTAGGCGGAGAGAAAGTGAAAATGGTATGAGCAGCGGTTATCCTAAGGTGGACAAAAGTTTCAGATGTCAAGAGTGTGGGGGTTTTAGGCAT
TATCAAGCAAAGTGGCATTATCAAGCAGAGTGTCCAAACTTCCTAAAGAGGAAAAAGAAAAGTCTTACTGCAACGCTTTCTAATAATGAGTCGGTTTCGAATAGTAATAG
TGAAAAAGACGGTTGGTCCTTGTTAGGGCGTATTACGAATGATGTTGTTGTAAATGCTACGGTCCCTGAGTAG
Protein sequenceShow/hide protein sequence
MKITAIEKANDIAILKLDELFGSLHTFKLTVDDKSDSIALPTKQFTKIVRRFNKRLANYGALYSKNRSYSSANYDTNPTSRRRESENGMSSGYPKVDKSFRCQECGGFRH
YQAKWHYQAECPNFLKRKKKSLTATLSNNESVSNSNSEKDGWSLLGRITNDVVVNATVPE