CuGenDBv2

Gene ID	PI0020363
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Genome location	chr11:11465787..11467258
RNA-Seq Expression	PI0020363
Synteny	PI0020363
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]

4.9e-66

72.94

Show/hide

Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR
        SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL TP ++EK  ++  L +N +   +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.6e-64

72.35

Show/hide

Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMT LLTSFVQG  +KVTKCGVC L+GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT 
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR
        SFQ EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK  ++  L +N +   +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]

2.1e-64

72.89

Show/hide

Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINER
        SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL TP ++EK  ++  L +N +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINER

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.5e-64

71.76

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Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KVTKCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR
        SFQ +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK  ++  L +N +   +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]

1.9e-65

71.76

Show/hide

Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR
        SFQ +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL TP ++EK  ++  L +N + + +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CQU8 uncharacterized protein LOC103503291

9.1e-66

71.76

Show/hide

Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR
        SFQ +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL TP ++EK  ++  L +N + + +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR

A0A5A7T4R3 Retrotransposon gag protein

7.7e-65

72.35

Show/hide

Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMT LLTSFVQG  +KVTKCGVC L+GH NDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT 
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR
        SFQ EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK  ++  L +N +   +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR

A0A5D3CB46 Retrotransposon gag protein

1.7e-64

71.76

Show/hide

Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG   KVTKCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR
        SFQ +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL TP ++EK  ++  L +N +   +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR

A0A5D3CRR8 Retrotransposon gag protein

1.0e-64

72.89

Show/hide

Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGN+NQ+ TQA  TS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINER
        SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL TP ++EK  ++  L +N +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINER

E5GBZ4 Retrotransposon gag protein

2.4e-66

72.94

Show/hide

Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGN+NQ+ TQA PTS+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR
        SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL TP ++EK  ++  L +N +   +
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTACCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGA
CCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAAC
CCACGCAAGCAACTCCTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCCACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATG
TCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAACCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCA
AACCCCTCCAAGTGAAGAAAAGGTACCTTCTAACCCTGACCTTCTAATAAATGAAAGAACCAGGGATCGAGCTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNQQPTQATPTSNNQGTNLEDLVKALATNTISFQNEMKQQM
SQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQTPPSEEKVPSNPDLLINERTRDRA

PI0020363 (gene) of Melon (PI 482460) v1 genome