CuGenDBv2

Gene ID	PI0020369
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	chr04:21990529..21993547
RNA-Seq Expression	PI0020369
Synteny	PI0020369
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152010.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

8.6e-168

91.12

Show/hide

Query:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
        MAVSL TPSISSFNNIAPPPHFSPTPSHNASDFKFRR S C VHR+TVSFSSSP LP SLRFL+YGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASG LGGLIATTQLLGALANSSRADEVPDIL+GLG+DFGA              KNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIAR
Subjt:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFD+ EEVKDITTKRKRLWRLTPVYM EWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Subjt:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_008447350.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo]

4.4e-164

89.64

Show/hide

Query:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLST  +SSFNNIAPPPHFSPTPSHNA DFKF R SC HVHR+TVSFSSSP LP SLRF +YGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASG LGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA              KNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVTTLNFEFDE EEVKDIT+KRK+LWRLTPVYM EWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_022131239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia]

5.1e-144

80.54

Show/hide

Query:  LSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFF
        +S  +ISSFNN  PPPH   T SHNA +FKF R  CC VH +TV FSS P L  SLR L   RRNLANF CSAA+KPEISSTAKIRSEVLSPFRSVRMFF
Subjt:  LSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFF

Query:  YLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC
        YLTFIASG LGGLIATTQLL ALANSSRA++VPDILKGLGIDFGA              KNAQLARLSREESLSNLKLRVDQ+KVIP+ +LRGIARLVIC
Subjt:  YLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC

Query:  AGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG
        AGPESFI+EAF+SSEPFTE+LLERGV+VVP ATDV++LNFEFDE E++KD+TTKRKRLWRLTPVYM EWSAWLDEQKKLAGVS++SPVYLSLRMDGRVRG
Subjt:  AGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG

Query:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_023554665.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]

6.6e-144

80.18

Show/hide

Query:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
        M VS++   I S NN   PPH S T SHNA + KF R  CCHVHR  VSF+  P +  SLR+L Y RRNLA+  CSA+DKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASG LGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGA              KNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIAR
Subjt:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFI+EAFK+SEPFTERLLERGVLV+P ATD ++LNFEFDE EE+KDITTKRKRLWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_038888898.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

3.4e-156

86.98

Show/hide

Query:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLSTP+ISS NNI  PPHFS T     SDFKFRR  CCHVHR+T+SF+SSP LP SL  L Y RRNLANF CSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASG LGGLIATTQLL ALANSSRA+EVPDILKGLGIDFGA              KNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFI+EAFKSSEPFTERLLERGVLVVPLATDV+TLNFEFDE EEVKD+TTKRKRLWRLTPVYM EWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L902 Uncharacterized protein

4.2e-168

91.12

Show/hide

Query:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
        MAVSL TPSISSFNNIAPPPHFSPTPSHNASDFKFRR S C VHR+TVSFSSSP LP SLRFL+YGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASG LGGLIATTQLLGALANSSRADEVPDIL+GLG+DFGA              KNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIAR
Subjt:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFD+ EEVKDITTKRKRLWRLTPVYM EWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Subjt:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A1S3BHU5 protein LOW PSII ACCUMULATION 1, chloroplastic

2.1e-164

89.64

Show/hide

Query:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLST  +SSFNNIAPPPHFSPTPSHNA DFKF R SC HVHR+TVSFSSSP LP SLRF +YGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASG LGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA              KNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVTTLNFEFDE EEVKDIT+KRK+LWRLTPVYM EWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A5D3BG35 Protein LOW PSII ACCUMULATION 1

2.1e-164

89.64

Show/hide

Query:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLST  +SSFNNIAPPPHFSPTPSHNA DFKF R SC HVHR+TVSFSSSP LP SLRF +YGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASG LGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA              KNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVTTLNFEFDE EEVKDIT+KRK+LWRLTPVYM EWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1BP58 protein LOW PSII ACCUMULATION 1, chloroplastic

2.5e-144

80.54

Show/hide

Query:  LSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFF
        +S  +ISSFNN  PPPH   T SHNA +FKF R  CC VH +TV FSS P L  SLR L   RRNLANF CSAA+KPEISSTAKIRSEVLSPFRSVRMFF
Subjt:  LSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFF

Query:  YLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC
        YLTFIASG LGGLIATTQLL ALANSSRA++VPDILKGLGIDFGA              KNAQLARLSREESLSNLKLRVDQ+KVIP+ +LRGIARLVIC
Subjt:  YLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC

Query:  AGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG
        AGPESFI+EAF+SSEPFTE+LLERGV+VVP ATDV++LNFEFDE E++KD+TTKRKRLWRLTPVYM EWSAWLDEQKKLAGVS++SPVYLSLRMDGRVRG
Subjt:  AGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG

Query:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HGA1 protein LOW PSII ACCUMULATION 1, chloroplastic

3.2e-144

80.18

Show/hide

Query:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV
        M VS++   I S NN   PPH S T SHNA + KF R  CCHVHR  VSF+  P +  SLR+L Y RRNLA+  CSA+DKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASG LGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGA              KNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIAR
Subjt:  RMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFI+EAFK+SEPFTERLLERGVLV+P ATD ++LNFEFDE EE+KDITTKRKRLWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

7.6e-26

29.43

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQN
        K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ G             + +  Q+ +++R+E+LS L LR+  N
Subjt:  KIRSEVLSPFRSVRMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQN

Query:  KVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPL---------------------ATDVTTLNFEFDECEE--VKDITTKRKRLWR
        +V+ +  LR   R VI AG +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +FD   +  V     K +  ++
Subjt:  KVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPL---------------------ATDVTTLNFEFDECEE--VKDITTKRKRLWR

Query:  LTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

5.4e-27

29.43

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQN
        K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ G             + +  Q+ +++R+E+LS L LR+  N
Subjt:  KIRSEVLSPFRSVRMFFYLTFIASGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQN

Query:  KVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPL---------------------ATDVTTLNFEFDECEE--VKDITTKRKRLWR
        +V+ +  LR   R VI AG +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +FD   +  V     K +  ++
Subjt:  KVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPL---------------------ATDVTTLNFEFDECEE--VKDITTKRKRLWR

Query:  LTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

5.1e-94

57.76

Show/hide

Query:  HFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANF--ICSAADKP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGALGGL
        H S    + A +    R    H HR  + FS       + R  I  ++   +F  +C AAD+P EIS+ A+IRSEVLSPFRSVRMFFYL FIASG+LGGL
Subjt:  HFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANF--ICSAADKP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGALGGL

Query:  IATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFIIEAFK
        IAT++L+GALAN +R+ EV +I+KGLG+D GA            + KNAQ+ARLSREE+L  LK+RV++ NKVI +  LRG+ARLVICAGP  FI EAFK
Subjt:  IATTQLLGALANSSRADEVPDILKGLGIDFGA----------RKQCKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFIIEAFK

Query:  SSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEV-KDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNAL
         S+ +T+ L+ERGV+VV  ATD  +   EFDE +   ++++ +RK+LWR+TPV++ EW  WL+EQKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A 
Subjt:  SSEPFTERLLERGVLVVPLATDVTTLNFEFDECEEV-KDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNAL

Query:  VAQLPPVKGLWSGLLDGMDGRV
        VAQLPPVKG+W+GLLDGMDGRV
Subjt:  VAQLPPVKGLWSGLLDGMDGRV

Sequences

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CDS sequence

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ATGGCGGTTTCCCTTTCCACTCCCAGCATTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTTCGGATTTCAAATTCCGCCG
TCCCAGCTGCTGCCATGTTCATCGAAGGACGGTATCATTTAGTTCTAGCCCTATGCTACCAGCTTCGCTTCGTTTTCTTATATACGGCAGAAGGAATTTGGCTAACTTCA
TTTGCTCGGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTATCTCCATTTCGGTCCGTTCGGATGTTCTTTTATCTCACTTTCATTGCT
AGTGGTGCATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCGTTGGCAAACTCATCAAGAGCTGACGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTT
TGGAGCCAGAAAACAATGCAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCA
CTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATTGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGTGGTGTT
TTAGTCGTACCCCTTGCCACAGATGTCACTACACTGAATTTTGAGTTTGATGAATGTGAAGAGGTGAAGGATATAACCACAAAAAGGAAAAGACTCTGGCGCTTGACTCC
AGTTTACATGAATGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCTGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTG
GTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGGAGAGTTCTTTGA

mRNA sequence

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Protein sequence

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MAVSLSTPSISSFNNIAPPPHFSPTPSHNASDFKFRRPSCCHVHRRTVSFSSSPMLPASLRFLIYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIA
SGALGGLIATTQLLGALANSSRADEVPDILKGLGIDFGARKQCKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIIEAFKSSEPFTERLLERGV
LVVPLATDVTTLNFEFDECEEVKDITTKRKRLWRLTPVYMNEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

PI0020369 (gene) of Melon (PI 482460) v1 genome