CuGenDBv2

Gene ID	PI0020419
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	ATP synthase subunit c, chloroplastic
Genome location	tig00003622:51922..52161
RNA-Seq Expression	PI0020419
Synteny	PI0020419
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0009579 - thylakoid (cellular component) GO:0031090 - organelle membrane (cellular component) GO:0031967 - organelle envelope (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0015078 - proton transmembrane transporter activity (molecular function)
InterPro domains	IPR000454 - ATP synthase, F0 complex, subunit C IPR035921 - F/V-ATP synthase subunit C superfamily IPR038662 - F1F0 ATP synthase subunit C superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AGW98192.1 ATP synthase CF0 subunit III [Ipomoea tricolor]

1.5e-11

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

AIG89848.1 hypothetical protein [Capsicum annuum]

6.7e-12

71.62

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S ASLIAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

KAF3776839.1 ATP synthase subunit alpha [Nymphaea thermarum]

1.5e-11

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

YP_009442318.1 ATP synthase CF0 C subunit [Taxillus chinensis]

1.5e-11

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

YP_009627550.1 ATP synthase CF0 C subunit [Allium chrysocephalum]

1.5e-11

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

TrEMBL top hits

e value

%identity

Alignment

A0A075VSK5 ATP synthase subunit 9, mitochondrial

3.2e-12

71.62

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S ASLIAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

A0A076E6X0 ATP synthase subunit c, chloroplastic

7.2e-12

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

A0A6H1XHY6 ATP synthase subunit c, chloroplastic

7.2e-12

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

A0A7H0R0V7 ATP synthase subunit c, chloroplastic

7.2e-12

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

K9L5P5 ATP synthase F0 sector subunit C

7.2e-12

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

SwissProt top hits

e value

%identity

Alignment

A4QJA2 ATP synthase subunit c, chloroplastic

2.0e-14

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

A4QJI6 ATP synthase subunit c, chloroplastic

2.0e-14

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

Q3V547 ATP synthase subunit c, chloroplastic

2.0e-14

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

Q4FGF2 ATP synthase subunit c, chloroplastic

2.0e-14

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

Q85FN2 ATP synthase subunit c, chloroplastic

2.0e-14

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00140.1 ATP synthase subunit C family protein

1.8e-15

70.27

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Query:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL
        MNPL+S AS+IAAGLAVGL SIGPGVGQGTAA                  GTLLLSLAFMEALTIYGLVVALAL
Subjt:  MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAA------------------GTLLLSLAFMEALTIYGLVVALAL

Sequences

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CDS sequence

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ATGAATCCACTTCTTTCTTTAGCTTCCCTTATTGCTGCTGGGTTGGCCGTCGGGCTTCCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGTACTTTATTGCT
TAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTGA

mRNA sequence

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ATGAATCCACTTCTTTCTTTAGCTTCCCTTATTGCTGCTGGGTTGGCCGTCGGGCTTCCTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTGCGGGTACTTTATTGCT
TAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTGA

Protein sequence

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MNPLLSLASLIAAGLAVGLPSIGPGVGQGTAAGTLLLSLAFMEALTIYGLVVALAL

PI0020419 (gene) of Melon (PI 482460) v1 genome