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PI0020425 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020425
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr04:23328232..23328534
RNA-Seq ExpressionPI0020425
SyntenyPI0020425
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019183635.1 PREDICTED: uncharacterized protein LOC109178455 [Ipomoea nil]2.0e-2366.67Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        DKAK+D+I+  PYPT +++VRSFLG A FYRRFIKDFSKIALPL  LL+K+ PF  D+KCK AF+ELK+ L S PI+Q PN
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]8.0e-2566.67Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        DKAK+DVI+  PYPTC++D+RSFLG A FYRRFIKDFS+IA PL  LL+KDVPF  D +C++AFN LK++LV+ PI+Q+PN
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

XP_028797073.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114752508 [Prosopis alba]1.2e-2367.9Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        DKAKID+I   PYP+C+KDVRSFLG A FYRRFI+DFSKIALPL+ LL+KDV FV D+ C+ A++ELK+RL + PI+Q PN
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]1.2e-2367.9Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        DKAKID+I   PYP+C+KDVRSFLG A FYRRFI+DFSKIALPL+ LL+KDV FV D+ C+ A++ELK+RL + PI+Q PN
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]8.8e-2467.9Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        DKAKID+I   PYP+C+KDVRSFLG A FYRRFI+DFSKIALPL+ LL+KDV FV D+ C+ A++ELK+RL + PI+Q PN
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

TrEMBL top hitse value%identityAlignment
A0A151QL68 Transposon Ty3-G Gag-Pol polyprotein1.2e-2367.9Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        DKAKI+VI   PYPTC+K++RSFLG A FYRRFIKDFSKIA PL+ LL+KD  F  +E C+ AF+ELK RLVS PIL +PN
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

A0A2U1NRI2 Reverse transcriptase8.1e-2366.67Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        DKAK+DVI K P PT +K +RSFLG A FYRRFIKDFSKIA PLT LL+KD+PF  D++C+KAF  LK++L  TPI+ SPN
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

A0A371IAU2 Retrovirus-related Pol polyprotein (Fragment)1.2e-2369.14Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        D+ KIDVI   P PT L++VRSFLG A+FYRRFIKDFSKIALPL+ LL+KDV F+ D+ C  AF ELK+RL STPILQ+PN
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)2.8e-2364.2Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        D AKIDVI   P+PTC++++RSFLG A FYRRFIKDFSKIALPL++LL+KD+ F  D+KCK+AF+ LK+ L STP++Q P+
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

A0A699HVJ5 Reverse transcriptase domain-containing protein6.2e-2366.67Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        DKAKIDVI K PYPT +K +RSFLG ASFY RFIKDFSKIA PLT LL+KD PF  +++C K FN LK++   TPI+ SPN
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein1.5e-1040.51Show/hide
Query:  AKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        A+   + K P PT  + VR FLG+A F R +I  F+ +A PL  L K+ +PF+  E+ +KAF+ +K+ L+S P L  P+
Subjt:  AKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

P04323 Retrovirus-related Pol polyprotein from transposon 17.63.4e-1040.51Show/hide
Query:  KIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPF-VIDEKCKKAFNELKQRLVSTPILQSPN
        KI+ IQK+P PT  K++++FLG   +YR+FI +F+ IA P+T  LKK++     + +   AF +LK  +   PIL+ P+
Subjt:  KIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPF-VIDEKCKKAFNELKQRLVSTPILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4123.6e-1241.98Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        D  K DVIQ +P P      R F+   ++YRRFIK+F+  +  +T L KK+VPF   ++C+KAF  LK +L++  +LQ P+
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN

P10401 Retrovirus-related Pol polyprotein from transposon gypsy4.0e-1140.91Show/hide
Query:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLK-----------KDVPFVIDEKCKKAFNELKQRLVSTPIL
        D  K+  IQ++P P C+  VRSFLG AS+YR FIKDF+ IA P+T +LK           K +P   +E  + AF  L+  L S  ++
Subjt:  DKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLK-----------KDVPFVIDEKCKKAFNELKQRLVSTPIL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.1e-1137.23Show/hide
Query:  VSHDKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLK-----------KDVPFVIDEKCKKAFNELKQRLVSTPILQSP
        +  D  K+  I + P PT +K+++ FLG  S+YR+FI+D++K+A PLT+L +             VP  +DE   ++FN+LK  L S+ IL  P
Subjt:  VSHDKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLK-----------KDVPFVIDEKCKKAFNELKQRLVSTPILQSP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.7e-1039.29Show/hide
Query:  VSHDKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN
        VS D AK++ +  +P P    ++R FLG   +YRRF+K++ KI  PLT LLKK+      E    AF  LK  + + P+L  P+
Subjt:  VSHDKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCACATGATAAAGCAAAAATCGACGTAATTCAAAAATTTCCATATCCTACTTGCTTAAAAGATGTTAGATCTTTTCTAGGTAGCGCCAGTTTTTATAGAAGGTT
TATTAAAGACTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCCTTAAAAAAGATGTGCCATTTGTGATAGATGAGAAATGCAAGAAAGCATTCAATGAACTCAAGCAAA
GGTTAGTTTCTACTCCCATTCTTCAATCTCCTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCACATGATAAAGCAAAAATCGACGTAATTCAAAAATTTCCATATCCTACTTGCTTAAAAGATGTTAGATCTTTTCTAGGTAGCGCCAGTTTTTATAGAAGGTT
TATTAAAGACTTTTCTAAAATTGCTTTACCTCTAACTTCTCTCCTTAAAAAAGATGTGCCATTTGTGATAGATGAGAAATGCAAGAAAGCATTCAATGAACTCAAGCAAA
GGTTAGTTTCTACTCCCATTCTTCAATCTCCTAATTGA
Protein sequenceShow/hide protein sequence
MVSHDKAKIDVIQKFPYPTCLKDVRSFLGSASFYRRFIKDFSKIALPLTSLLKKDVPFVIDEKCKKAFNELKQRLVSTPILQSPN