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PI0020433 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020433
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr01:11875238..11875501
RNA-Seq ExpressionPI0020433
SyntenyPI0020433
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038159.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.2e-2575.58Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT+EETIVEYNVRVL+IANESF LGEKI ESKLV KVL SLP++FDMKV AIEEA+DI TLKLDELFGS+ T+E+T  D+  KK K
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

KAA0039061.1 uncharacterized protein E6C27_scaffold84G001570 [Cucumis melo var. makuwa]4.8e-2572.09Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT++ETI +YN RVL+IAN+S  LGEKI+ESK+VRK+L SLPR+FDMKVTAIEEA DI TLKLDELFGSL T+E+T  D+  KKGK
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

KAA0039209.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.4e-2469.77Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT++E++ EYN RVL+IAN+S  LGEKI +SK+V KVLCSLPR+FDMKVTAIEEA DI TLKLDELFGSL T+E+   D+  KKGK
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

KAA0051798.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.1e-2470.93Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT++ET+ EYN RVL+IAN+S  LGEKI ESK+V KVL SLPR+FDMKVTAIEEA DI TLKLDELFGSL T+E+   D+  KKGK
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

KAA0052224.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.4e-2474.42Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT EE I EYNVRVL+IANESF LGEKI ESKLVRKVL SLP +FDMKVT IEEA+DI TLKLDELFGSL T+E+   ++  KKGK
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

TrEMBL top hitse value%identityAlignment
A0A5A7T9Y1 Gag-pol polyprotein1.0e-2575.58Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT+EETIVEYNVRVL+IANESF LGEKI ESKLV KVL SLP++FDMKV AIEEA+DI TLKLDELFGS+ T+E+T  D+  KK K
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

A0A5A7TBR7 Integrase catalytic domain-containing protein2.3e-2572.09Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT++ETI +YN RVL+IAN+S  LGEKI+ESK+VRK+L SLPR+FDMKVTAIEEA DI TLKLDELFGSL T+E+T  D+  KKGK
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

A0A5A7TD52 Gag-pol polyprotein6.8e-2569.77Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT++E++ EYN RVL+IAN+S  LGEKI +SK+V KVLCSLPR+FDMKVTAIEEA DI TLKLDELFGSL T+E+   D+  KKGK
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

A0A5A7UA40 Gag-pol polyprotein6.8e-2574.42Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT EE I EYNVRVL+IANESF LGEKI ESKLVRKVL SLP +FDMKVT IEEA+DI TLKLDELFGSL T+E+   ++  KKGK
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

A0A5D3DCZ8 Gag-pol polyprotein2.0e-2470.93Show/hide
Query:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK
        MT++ET+ EYN RVL+IAN+S  LGEKI ESK+V KVL SLPR+FDMKVTAIEEA DI TLKLDELFGSL T+E+   D+  KKGK
Subjt:  MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGATGAGGAGACTATTGTAGAGTACAATGTACGTGTCTTAGATATAGCCAATGAGTCTTTTGCTCTAGGTGAGAAGATTGCAGAATCAAAGTTAGTCAGGAAGGT
GTTATGTTCGCTGCCAAGGCGTTTTGATATGAAAGTTACTGCGATTGAGGAAGCGAATGACATAGCCACCTTAAAATTGGATGAGCTATTTGGGTCTCTACATACGTACG
AATTGACGTTTGATGATAAGGGTGGCAAGAAGGGTAAAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGATGAGGAGACTATTGTAGAGTACAATGTACGTGTCTTAGATATAGCCAATGAGTCTTTTGCTCTAGGTGAGAAGATTGCAGAATCAAAGTTAGTCAGGAAGGT
GTTATGTTCGCTGCCAAGGCGTTTTGATATGAAAGTTACTGCGATTGAGGAAGCGAATGACATAGCCACCTTAAAATTGGATGAGCTATTTGGGTCTCTACATACGTACG
AATTGACGTTTGATGATAAGGGTGGCAAGAAGGGTAAAATGTAA
Protein sequenceShow/hide protein sequence
MTDEETIVEYNVRVLDIANESFALGEKIAESKLVRKVLCSLPRRFDMKVTAIEEANDIATLKLDELFGSLHTYELTFDDKGGKKGKM