CuGenDBv2

Gene ID	PI0020474
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribosomal L18p/L5e family protein
Genome location	chr03:19673431..19681727
RNA-Seq Expression	PI0020474
Synteny	PI0020474
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8646622.1 hypothetical protein Csa_005380 [Cucumis sativus]

9.5e-59

95.93

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGV+DVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGT
        VLPLFDSVQRSG+AVDG EKLGT
Subjt:  VLPLFDSVQRSGIAVDGVEKLGT

XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]

1.9e-59

95.97

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGV+DVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGTG
        VLPLFDSVQRSG+AVDG EKLGTG
Subjt:  VLPLFDSVQRSGIAVDGVEKLGTG

XP_016900104.1 PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo]

2.1e-58

95.97

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSK+ASRVG KLGHRLKEIGV+DVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGTG
        VLPLFDSVQRSGIAVDGVEKLG G
Subjt:  VLPLFDSVQRSGIAVDGVEKLGTG

XP_038884095.1 uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida]

4.7e-58

93.55

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGV+DVRIDLAEE SRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGTG
        VLPLFDSVQRSG+AVDG EKLGTG
Subjt:  VLPLFDSVQRSGIAVDGVEKLGTG

XP_038884098.1 uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]

4.7e-58

93.55

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGV+DVRIDLAEE SRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGTG
        VLPLFDSVQRSG+AVDG EKLGTG
Subjt:  VLPLFDSVQRSGIAVDGVEKLGTG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE39 Uncharacterized protein

9.2e-60

95.97

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGV+DVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGTG
        VLPLFDSVQRSG+AVDG EKLGTG
Subjt:  VLPLFDSVQRSGIAVDGVEKLGTG

A0A1S4DVU4 uncharacterized protein LOC103488672

1.0e-58

95.97

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSK+ASRVG KLGHRLKEIGV+DVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGTG
        VLPLFDSVQRSGIAVDGVEKLG G
Subjt:  VLPLFDSVQRSGIAVDGVEKLGTG

A0A5D3BWW4 Uncharacterized protein

1.0e-58

95.97

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSK+ASRVG KLGHRLKEIGV+DVRIDLAEELSRP+YYRKM
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGTG
        VLPLFDSVQRSGIAVDGVEKLG G
Subjt:  VLPLFDSVQRSGIAVDGVEKLGTG

A0A6J1EVG7 uncharacterized protein LOC111436340

4.4e-54

90.32

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGV+DVRIDLAEELSRPV YR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGTG
        VLPLFDSV+RSG+AV+G EKLG+G
Subjt:  VLPLFDSVQRSGIAVDGVEKLGTG

A0A6J1JZ79 uncharacterized protein LOC111488745

1.4e-55

91.13

Show/hide

Query:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGV+DVRIDLAEELSRPVYYR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVQRSGIAVDGVEKLGTG
        VLPLFDSV+RSG+AV+G EKLG+G
Subjt:  VLPLFDSVQRSGIAVDGVEKLGTG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43310.1 Ribosomal L18p/L5e family protein

1.9e-41

70.34

Show/hide

Query:  NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKMVLP
        +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK ASRVGEKLG RL+E+GV  V ID  EE+SRP+++RK VLP
Subjt:  NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKMVLP

Query:  LFDSVQRSGIAVDGVEKL
        LFDSV+R+GI VDG E+L
Subjt:  LFDSVQRSGIAVDGVEKL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACAGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTC
CGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGCTTTCCTCGATCCAACAATTTCTGGGACTCCAAAATCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACC
GTTTGAAGGAGATCGGCGTCACCGATGTTCGGATTGATCTCGCTGAAGAGCTCTCCCGCCCTGTTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGT
TCCGGCATCGCCGTTGATGGCGTTGAGAAGCTTGGAACAGGGTGA

mRNA sequence

Show/hide mRNA sequence

ATGATTTCCAAATTGTTCAAACAAAGTTCAATGGGAGAAGAGAACAGAAGGCGATTTTGAAGCCCTAATAAATACGCCCGTTTCCTCATCATGTCCATTAACCAAAACCA
CCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACAGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCT
ATTACCGCTCTAAACTCCACCGCTTTCCTCGATCCAACAATTTCTGGGACTCCAAAATCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGCGTC
ACCGATGTTCGGATTGATCTCGCTGAAGAGCTCTCCCGCCCTGTTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGTTCCGGCATCGCCGTTGATGG
CGTTGAGAAGCTTGGAACAGGGTGATCGGTGAAGACTGATGGTTAGTTGACGACGGTCGTCAGAATTGGTTGTCGAAAGGTCGCCGGTGGAATCATTGGAGGTAGTGGTC
AAAGATTGATCGATGACGATCATCAGAAGTGGTGGTTCGAAAGTTGGTCGACGAACTTTCTAACCTTTAAAATAAATATTCCTTAGGTCCCGTTTGTTTCACAGGAATTG
TCATGGGATTTTAGACAAACATTAATTATCCTTGTTTGTCTCACAAACTTTCAGATTTTAAAATCTAGGATACTATTGTCTAGGGAACATTAAAACCCACTTGACATGGG
TCTTTTATTGCCCTTCAAACTTGTGGGATTTTTATTCCTAGAAATGAATGAAGTCGGATTAATTAATAAATTAGTATCAATTAATCATAA

Protein sequence

Show/hide protein sequence

MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVTDVRIDLAEELSRPVYYRKMVLPLFDSVQR
SGIAVDGVEKLGTG

PI0020474 (gene) of Melon (PI 482460) v1 genome