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PI0020491 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020491
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGeranylgeranyl transferase type-2 subunit beta-like
Genome locationchr01:3049260..3049448
RNA-Seq ExpressionPI0020491
SyntenyPI0020491
Gene Ontology termsGO:0018344 - protein geranylgeranylation (biological process)
GO:0005968 - Rab-protein geranylgeranyltransferase complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004663 - Rab geranylgeranyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR045089 - Prenyltransferase subunit beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031621.1 geranylgeranyl transferase type-2 subunit beta-like [Cucumis melo var. makuwa]2.9e-1680Show/hide
Query:  MSSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMG
        MS SAV SVFC VG+LAIMGSL HIDKDLLG W CERQ+KSGGP GRPEKLP+ G
Subjt:  MSSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMG

RVW72500.1 Geranylgeranyl transferase type-2 subunit beta 1 [Vitis vinifera]5.5e-1568.42Show/hide
Query:  VTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        +T+VFC VGALA+ GSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Subjt:  VTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

XP_038887307.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida]4.2e-1574.07Show/hide
Query:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        +FC VGALAIMGSLHHIDKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Subjt:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

XP_038887310.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida]4.2e-1574.07Show/hide
Query:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        +FC VGALAIMGSLHHIDKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Subjt:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

XP_038887312.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida]4.2e-1574.07Show/hide
Query:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        +FC VGALAIMGSLHHIDKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Subjt:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

TrEMBL top hitse value%identityAlignment
A0A438GJW4 Geranylgeranyl transferase type-2 subunit beta 12.7e-1568.42Show/hide
Query:  VTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        +T+VFC VGALA+ GSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Subjt:  VTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

A0A5A7SQ05 Geranylgeranyl transferase type-2 subunit beta-like1.4e-1680Show/hide
Query:  MSSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMG
        MS SAV SVFC VG+LAIMGSL HIDKDLLG W CERQ+KSGGP GRPEKLP+ G
Subjt:  MSSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMG

A0A7C9A538 Geranylgeranyl transferase type-2 subunit beta2.7e-1572.22Show/hide
Query:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        +FC VGALAIMGSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Subjt:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

A0A7C9A5M7 Geranylgeranyl transferase type-2 subunit beta2.7e-1572.22Show/hide
Query:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        +FC VGALAIMGSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Subjt:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

A0A7C9A7A9 Geranylgeranyl transferase type-2 subunit beta2.7e-1572.22Show/hide
Query:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        +FC VGALAIMGSLHH+DKDLLG W CERQVKSGG +GRPEKLPD+  +++ +S
Subjt:  VFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

SwissProt top hitse value%identityAlignment
P53611 Geranylgeranyl transferase type-2 subunit beta2.9e-1147.54Show/hide
Query:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        S S    ++C  G LAI   LH ++ DLLG W CERQ+ SGG +GRPEKLPD+  +++ ++
Subjt:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

P53612 Geranylgeranyl transferase type-2 subunit beta2.9e-1147.54Show/hide
Query:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        S S    ++C  G LAI   LH ++ DLLG W CERQ+ SGG +GRPEKLPD+  +++ ++
Subjt:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

Q5E9B3 Geranylgeranyl transferase type-2 subunit beta2.9e-1147.54Show/hide
Query:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        S S    ++C  G LAI   LH ++ DLLG W CERQ+ SGG +GRPEKLPD+  +++ ++
Subjt:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

Q84J75 Geranylgeranyl transferase type-2 subunit beta 19.7e-1557.38Show/hide
Query:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        + S    +FC VGALAI GSLHH+DKD LG W CERQ+K+GG +GRPEKL D+  +++ +S
Subjt:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

Q9LHL5 Geranylgeranyl transferase type-2 subunit beta 22.4e-1356.45Show/hide
Query:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQ-VKSGGPSGRPEKLPDMGLNFYYIS
        + S    +FC VGALAI G+LH +DKDLLG W CERQ  +SGG +GRPEKLPD+  +++ +S
Subjt:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQ-VKSGGPSGRPEKLPDMGLNFYYIS

Arabidopsis top hitse value%identityAlignment
AT3G12070.1 RAB geranylgeranyl transferase beta subunit 21.7e-1456.45Show/hide
Query:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQ-VKSGGPSGRPEKLPDMGLNFYYIS
        + S    +FC VGALAI G+LH +DKDLLG W CERQ  +SGG +GRPEKLPD+  +++ +S
Subjt:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQ-VKSGGPSGRPEKLPDMGLNFYYIS

AT3G12070.2 RAB geranylgeranyl transferase beta subunit 21.7e-1456.45Show/hide
Query:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQ-VKSGGPSGRPEKLPDMGLNFYYIS
        + S    +FC VGALAI G+LH +DKDLLG W CERQ  +SGG +GRPEKLPD+  +++ +S
Subjt:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQ-VKSGGPSGRPEKLPDMGLNFYYIS

AT5G12210.1 RAB geranylgeranyl transferase beta subunit 16.9e-1657.38Show/hide
Query:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        + S    +FC VGALAI GSLHH+DKD LG W CERQ+K+GG +GRPEKL D+  +++ +S
Subjt:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS

AT5G12210.2 RAB geranylgeranyl transferase beta subunit 16.9e-1657.38Show/hide
Query:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS
        + S    +FC VGALAI GSLHH+DKD LG W CERQ+K+GG +GRPEKL D+  +++ +S
Subjt:  SSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGTTCTGCCGTGACTTCAGTTTTCTGTTATGTTGGTGCTCTTGCTATAATGGGTTCTCTACACCATATTGACAAGGATCTCCTTGGCCACTGGTCATGTGAGCG
GCAAGTCAAATCTGGAGGTCCTAGTGGTCGACCCGAGAAACTTCCTGATATGGGTTTGAACTTCTATTACATATCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGTTCTGCCGTGACTTCAGTTTTCTGTTATGTTGGTGCTCTTGCTATAATGGGTTCTCTACACCATATTGACAAGGATCTCCTTGGCCACTGGTCATGTGAGCG
GCAAGTCAAATCTGGAGGTCCTAGTGGTCGACCCGAGAAACTTCCTGATATGGGTTTGAACTTCTATTACATATCGTAA
Protein sequenceShow/hide protein sequence
MSSSAVTSVFCYVGALAIMGSLHHIDKDLLGHWSCERQVKSGGPSGRPEKLPDMGLNFYYIS