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PI0020517 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020517
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionProtein RKD2-like isoform X1
Genome locationchr07:23494589..23495710
RNA-Seq ExpressionPI0020517
SyntenyPI0020517
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR044607 - Transcription factor RKD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064525.1 protein RKD2-like isoform X1 [Cucumis melo var. makuwa]1.5e-7577.08Show/hide
Query:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTT------------------KF
        MADSGDGEFPLWKFH+NYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPTSTSGEA +AADV YWNST +G S ++                   F
Subjt:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTT------------------KF

Query:  QIPGYYGGDDGD----VYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE
        QIPGYY GD GD    VYNMQLPI PES TFQPITCSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP L  TNSSSFTQYKMF+
Subjt:  QIPGYYGGDDGD----VYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

KAG6608345.1 Protein RKD4, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5365.54Show/hide
Query:  MADSGDGEFPLWKFHRNYPLFTDD-ILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSR------TTKFQIPGYYGGDDG
        MADSGD EFPLW FH+N PLFTDD IL+FMA IKP AAEL+A S A DQ   PP+STSGE    A++ YW+ST L  S        T F  PG YGGD G
Subjt:  MADSGDGEFPLWKFHRNYPLFTDD-ILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSR------TTKFQIPGYYGGDDG

Query:  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE
           + Q  ITPE +TFQPITCSCCL+LREIVHTNGINTRKLEIHGRFGILWHAIL+E FP    TN S+  QYKMF+
Subjt:  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

KAG7037698.1 Protein RKD3, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-5365.34Show/hide
Query:  MADSGDGEFPLWKFHRNYPLFTDD-ILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSR------TTKFQIPGYYGGDDG
        MADSGD EFPLW FH+N PLFTDD IL+FMA IKP AAEL+A S A DQ   PP+STSGE    A++ YW+ST L  S        T F  PG YGGD G
Subjt:  MADSGDGEFPLWKFHRNYPLFTDD-ILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSR------TTKFQIPGYYGGDDG

Query:  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMF
           + Q  ITPE +TFQPITCSCCL+LREIVHTNGINTRKLEIHGRFGILWHAIL+E FP    TN S+  QYK+F
Subjt:  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMF

KGN55365.1 hypothetical protein Csa_012027 [Cucumis sativus]3.4e-7578.61Show/hide
Query:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNST--SLGMS---------------RTTKFQ
        MADSGDGEFP W+FHRNYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPT TSGEA +AADV YWNST    G S                   FQ
Subjt:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNST--SLGMS---------------RTTKFQ

Query:  IPGYYGGDDGDVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE
         PGYYG D G VYNMQLPITPES TFQPI CSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTL  TNSSSFTQYKMFE
Subjt:  IPGYYGGDDGDVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

TYK20065.1 protein RKD2-like isoform X1 [Cucumis melo var. makuwa]1.5e-7577.08Show/hide
Query:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTT------------------KF
        MADSGDGEFPLWKFH+NYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPTSTSGEA +AADV YWNST +G S ++                   F
Subjt:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTT------------------KF

Query:  QIPGYYGGDDGD----VYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE
        QIPGYY GD GD    VYNMQLPI PES TFQPITCSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP L  TNSSSFTQYKMF+
Subjt:  QIPGYYGGDDGD----VYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

TrEMBL top hitse value%identityAlignment
A0A0A0L065 Uncharacterized protein1.6e-7578.61Show/hide
Query:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNST--SLGMS---------------RTTKFQ
        MADSGDGEFP W+FHRNYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPT TSGEA +AADV YWNST    G S                   FQ
Subjt:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNST--SLGMS---------------RTTKFQ

Query:  IPGYYGGDDGDVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE
         PGYYG D G VYNMQLPITPES TFQPI CSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTL  TNSSSFTQYKMFE
Subjt:  IPGYYGGDDGDVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

A0A1S3BCY1 uncharacterized protein LOC103488516 isoform X23.7e-1154.55Show/hide
Query:  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE
        DV +  LPI P   T  P  CSCC VLRE +HTNG+N+RKLEIHGR G++ HAILE   P ++  N S   QY+MF+
Subjt:  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

A0A5A7V999 Protein RKD2-like isoform X13.7e-1154.55Show/hide
Query:  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE
        DV +  LPI P   T  P  CSCC VLRE +HTNG+N+RKLEIHGR G++ HAILE   P ++  N S   QY+MF+
Subjt:  DVYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

A0A5A7VF79 Protein RKD2-like isoform X17.4e-7677.08Show/hide
Query:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTT------------------KF
        MADSGDGEFPLWKFH+NYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPTSTSGEA +AADV YWNST +G S ++                   F
Subjt:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTT------------------KF

Query:  QIPGYYGGDDGD----VYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE
        QIPGYY GD GD    VYNMQLPI PES TFQPITCSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP L  TNSSSFTQYKMF+
Subjt:  QIPGYYGGDDGD----VYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

A0A5D3D916 Protein RKD2-like isoform X17.4e-7677.08Show/hide
Query:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTT------------------KF
        MADSGDGEFPLWKFH+NYPLFTDDILNFMAQIKP AAELMAKSPAADQ+LLPPTSTSGEA +AADV YWNST +G S ++                   F
Subjt:  MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTT------------------KF

Query:  QIPGYYGGDDGD----VYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE
        QIPGYY GD GD    VYNMQLPI PES TFQPITCSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP L  TNSSSFTQYKMF+
Subjt:  QIPGYYGGDDGD----VYNMQLPITPESYTFQPITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATTCAGGGGACGGCGAGTTCCCATTGTGGAAATTTCATCGGAATTACCCTTTATTCACCGACGACATTCTCAATTTCATGGCCCAAATCAAGCCCGCCGCCGC
TGAATTAATGGCCAAATCCCCCGCTGCAGACCAAAATTTACTACCACCCACTTCCACTTCCGGTGAAGCCGCCACCGCCGCTGACGTGGGTTATTGGAATTCTACTTCGT
TGGGAATGTCAAGAACAACAAAATTTCAGATTCCGGGTTACTACGGCGGCGACGACGGCGATGTTTACAATATGCAACTTCCGATTACGCCCGAGAGTTATACGTTTCAG
CCTATTACTTGTAGTTGCTGCCTAGTTCTTAGAGAAATCGTTCATACCAATGGTATCAACACAAGAAAACTAGAGATCCATGGAAGATTCGGAATATTGTGGCATGCAAT
TCTAGAAGAAAATTTCCCCACCCTCAGTAGCACCAATTCTTCAAGTTTCACTCAATACAAAATGTTCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATTCAGGGGACGGCGAGTTCCCATTGTGGAAATTTCATCGGAATTACCCTTTATTCACCGACGACATTCTCAATTTCATGGCCCAAATCAAGCCCGCCGCCGC
TGAATTAATGGCCAAATCCCCCGCTGCAGACCAAAATTTACTACCACCCACTTCCACTTCCGGTGAAGCCGCCACCGCCGCTGACGTGGGTTATTGGAATTCTACTTCGT
TGGGAATGTCAAGAACAACAAAATTTCAGATTCCGGGTTACTACGGCGGCGACGACGGCGATGTTTACAATATGCAACTTCCGATTACGCCCGAGAGTTATACGTTTCAG
CCTATTACTTGTAGTTGCTGCCTAGTTCTTAGAGAAATCGTTCATACCAATGGTATCAACACAAGAAAACTAGAGATCCATGGAAGATTCGGAATATTGTGGCATGCAAT
TCTAGAAGAAAATTTCCCCACCCTCAGTAGCACCAATTCTTCAAGTTTCACTCAATACAAAATGTTCGAGTAA
Protein sequenceShow/hide protein sequence
MADSGDGEFPLWKFHRNYPLFTDDILNFMAQIKPAAAELMAKSPAADQNLLPPTSTSGEAATAADVGYWNSTSLGMSRTTKFQIPGYYGGDDGDVYNMQLPITPESYTFQ
PITCSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLSSTNSSSFTQYKMFE