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PI0020544 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020544
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr08:12464781..12465070
RNA-Seq ExpressionPI0020544
SyntenyPI0020544
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053418.1 hypothetical protein E6C27_scaffold428G00880 [Cucumis melo var. makuwa]8.0e-1770.31Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKI
        M DASDVA+  +LGQKK+K+IH IYY SKTLN+A+ENYTTT+K+FL+VV+AI+K+ SYIVGSK+
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKI

KAA0056421.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]4.7e-1758.33Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK-----------IFDGKERCQTAADQMDSSTPKI
        M D SDVA+ A+LGQK+DKMIH   Y SKTLN+ QENYTTTKKE L VV+ I+KY SYI+GSK           IFDGK     AA+QMD   P+I
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK-----------IFDGKERCQTAADQMDSSTPKI

KAD4180442.1 hypothetical protein E3N88_29033 [Mikania micrantha]1.0e-1671.43Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK
        MCDASD A+ A+LGQ++DK  H IYYASKTLNDAQENYTTT+KE L VV+A  K+WSY+V SK
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK

XP_021767618.1 uncharacterized protein LOC110732007 [Chenopodium quinoa]1.0e-1667.19Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKI
        MCDASD ++ ++LGQ+KDK +H+IYY SKTL+DAQ NYTTTKKEFL +V+AI+K+ SY++GSKI
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKI

XP_022031197.1 uncharacterized protein LOC110932147 [Helianthus annuus]8.0e-1761.54Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKIFDGKERCQTAADQM
        MCDASD A+ A+LGQ+++K  H IYYASKTLNDAQENYTTT+KE L VV+A  K+ SY+V SK  D K     AAD +
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKIFDGKERCQTAADQM

TrEMBL top hitse value%identityAlignment
A0A5A7US86 Retrovirus-related Pol polyprotein from transposon 17.62.3e-1758.33Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK-----------IFDGKERCQTAADQMDSSTPKI
        M D SDVA+ A+LGQK+DKMIH   Y SKTLN+ QENYTTTKKE L VV+ I+KY SYI+GSK           IFDGK     AA+QMD   P+I
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK-----------IFDGKERCQTAADQMDSSTPKI

A0A5D3CVE7 Uncharacterized protein3.9e-1770.31Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKI
        M DASDVA+  +LGQKK+K+IH IYY SKTLN+A+ENYTTT+K+FL+VV+AI+K+ SYIVGSK+
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKI

A0A5N6N442 Integrase catalytic domain-containing protein5.1e-1771.43Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK
        MCDASD A+ A+LGQ++DK  H IYYASKTLNDAQENYTTT+KE L VV+A  K+WSY+V SK
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK

A0A5N6PAH7 Integrase catalytic domain-containing protein5.1e-1771.43Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK
        MCDASD A+ A+LGQ++DK  H IYYASKTLNDAQENYTTT+KE L VV+A  K+WSY+V SK
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSK

A0A6P5N6R9 uncharacterized protein LOC1102786438.7e-1757.69Show/hide
Query:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKIFDGKERCQTAADQM
        MCDASD A+ A+LGQ+KDK++H IYYASK LND Q+NYTTT+KE L +V+A  KY  Y++GSKI D        AD +
Subjt:  MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKIFDGKERCQTAADQM

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.6e-0644.07Show/hide
Query:  DASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVG
        DASDVA+ A+L Q      H + Y S+TLN+ + NY+T +KE L +V+A K +  Y++G
Subjt:  DASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVG

P20825 Retrovirus-related Pol polyprotein from transposon 2971.2e-0440.68Show/hide
Query:  DASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVG
        DAS++A+ A+L Q      H I + S+TLND + NY+  +KE L +V+A K +  Y++G
Subjt:  DASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVG

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.6e-0436.67Show/hide
Query:  DASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGS
        DAS+ AI A+L Q        I Y S++LN  +ENY T +KE L +++++    +Y+ G+
Subjt:  DASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCGACGCGAGTGATGTTGCAATAGAAGCCATACTGGGTCAAAAGAAAGATAAGATGATCCACTCAATTTACTACGCAAGCAAAACTCTAAACGATGCCCAAGAGAA
TTACACAACTACGAAAAAGGAGTTTCTCATCGTAGTTTATGCAATTAAAAAATACTGGAGCTATATAGTTGGCTCGAAGATATTTGATGGCAAGGAAAGATGCCAAACCG
CGGCTGATCAGATGGATTCTTCTACTCCAAAAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCGACGCGAGTGATGTTGCAATAGAAGCCATACTGGGTCAAAAGAAAGATAAGATGATCCACTCAATTTACTACGCAAGCAAAACTCTAAACGATGCCCAAGAGAA
TTACACAACTACGAAAAAGGAGTTTCTCATCGTAGTTTATGCAATTAAAAAATACTGGAGCTATATAGTTGGCTCGAAGATATTTGATGGCAAGGAAAGATGCCAAACCG
CGGCTGATCAGATGGATTCTTCTACTCCAAAAATTTGA
Protein sequenceShow/hide protein sequence
MCDASDVAIEAILGQKKDKMIHSIYYASKTLNDAQENYTTTKKEFLIVVYAIKKYWSYIVGSKIFDGKERCQTAADQMDSSTPKI