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PI0020558 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020558
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:21494894..21495285
RNA-Seq ExpressionPI0020558
SyntenyPI0020558
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]5.8e-4576.8Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPR----------CRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN
        MPPP A  +VINHNDNQ EGDGSDGLDDDQVTLL E R           RGRAYQNIQRRAQQEAPQ +RN+ AIKFKI KF GKT+PEEYIQWEKEVEN
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPR----------CRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN

Query:  VFACHNFSDEQKVRFCVAKFKDYPQ
        VFACHNF++EQKVRFCV KFKDY Q
Subjt:  VFACHNFSDEQKVRFCVAKFKDYPQ

KAA0040916.1 uncharacterized protein E6C27_scaffold125G00290 [Cucumis melo var. makuwa]2.2e-2884.21Show/hide
Query:  RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVENVFACHNFSDEQKVRFCVAKFKDY
        R R RAYQNIQRRAQQEAP+ + NMGAIKFKIPKF  KT+PEEYIQWEKEVENVF CHNF DEQKVRFCV+KFKDY
Subjt:  RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVENVFACHNFSDEQKVRFCVAKFKDY

KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]2.0e-4273.6Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN
        MPPPLA  ++INHNDNQ EGDGSD LDDDQVTLLGEP          R RGRAYQNIQRRAQQEA Q + NM AIKFKIPKF  KT+P+EYI+WEKEVEN
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN

Query:  VFACHNFSDEQKVRFCVAKFKDYPQ
        VF CHNF+DEQKVRF V+K KDY Q
Subjt:  VFACHNFSDEQKVRFCVAKFKDYPQ

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]5.2e-4676Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN
        MPPPLA  + INHN+NQYEGDG D LDDDQVTLL EP          R  G+AYQNIQRR QQE PQ++RNM AIKFKIPKF GKT+PEEYIQWEKEVEN
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN

Query:  VFACHNFSDEQKVRFCVAKFKDYPQ
        VFACHNFS+EQKVRFCVAKFKDY Q
Subjt:  VFACHNFSDEQKVRFCVAKFKDYPQ

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]2.0e-4273.6Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN
        MPPPLA  ++INHNDNQ EGDGSD LDDDQVTLLGEP          R RGRAYQNIQRRAQQEA Q + NM AIKFKIPKF  KT+P+EYI+WEKEVEN
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN

Query:  VFACHNFSDEQKVRFCVAKFKDYPQ
        VF CHNF+DEQKVRF V+K KDY Q
Subjt:  VFACHNFSDEQKVRFCVAKFKDYPQ

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein2.8e-4576.8Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPR----------CRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN
        MPPP A  +VINHNDNQ EGDGSDGLDDDQVTLL E R           RGRAYQNIQRRAQQEAPQ +RN+ AIKFKI KF GKT+PEEYIQWEKEVEN
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPR----------CRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN

Query:  VFACHNFSDEQKVRFCVAKFKDYPQ
        VFACHNF++EQKVRFCV KFKDY Q
Subjt:  VFACHNFSDEQKVRFCVAKFKDYPQ

A0A5A7TK52 Retrotrans_gag domain-containing protein9.9e-4373.6Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN
        MPPPLA  ++INHNDNQ EGDGSD LDDDQVTLLGEP          R RGRAYQNIQRRAQQEA Q + NM AIKFKIPKF  KT+P+EYI+WEKEVEN
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN

Query:  VFACHNFSDEQKVRFCVAKFKDYPQ
        VF CHNF+DEQKVRF V+K KDY Q
Subjt:  VFACHNFSDEQKVRFCVAKFKDYPQ

A0A5A7TYI0 Uncharacterized protein2.5e-4676Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN
        MPPPLA  + INHN+NQYEGDG D LDDDQVTLL EP          R  G+AYQNIQRR QQE PQ++RNM AIKFKIPKF GKT+PEEYIQWEKEVEN
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN

Query:  VFACHNFSDEQKVRFCVAKFKDYPQ
        VFACHNFS+EQKVRFCVAKFKDY Q
Subjt:  VFACHNFSDEQKVRFCVAKFKDYPQ

A0A5D3CFQ1 CCHC-type domain-containing protein1.1e-2884.21Show/hide
Query:  RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVENVFACHNFSDEQKVRFCVAKFKDY
        R R RAYQNIQRRAQQEAP+ + NMGAIKFKIPKF  KT+PEEYIQWEKEVENVF CHNF DEQKVRFCV+KFKDY
Subjt:  RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVENVFACHNFSDEQKVRFCVAKFKDY

A0A5D3CHG3 Retrotrans_gag domain-containing protein9.9e-4373.6Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN
        MPPPLA  ++INHNDNQ EGDGSD LDDDQVTLLGEP          R RGRAYQNIQRRAQQEA Q + NM AIKFKIPKF  KT+P+EYI+WEKEVEN
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEP----------RCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVEN

Query:  VFACHNFSDEQKVRFCVAKFKDYPQ
        VF CHNF+DEQKVRF V+K KDY Q
Subjt:  VFACHNFSDEQKVRFCVAKFKDYPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCTCCTCTAGCACAACATGTGGTAATTAACCATAATGACAACCAATATGAGGGTGATGGTTCTGATGGTTTAGACGATGACCAAGTTACATTACTTGGGGAGCC
AAGATGTCGTGGAAGAGCTTATCAAAACATCCAAAGGAGAGCTCAACAAGAAGCACCTCAGGTTGATCGCAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCGTCG
GGAAAACTAATCCGGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTTTTTGCTTGCCATAATTTTAGCGACGAACAAAAGGTTAGATTTTGTGTTGCCAAATTT
AAAGATTATCCTCAACTTGGTGGGACAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCTCCTCTAGCACAACATGTGGTAATTAACCATAATGACAACCAATATGAGGGTGATGGTTCTGATGGTTTAGACGATGACCAAGTTACATTACTTGGGGAGCC
AAGATGTCGTGGAAGAGCTTATCAAAACATCCAAAGGAGAGCTCAACAAGAAGCACCTCAGGTTGATCGCAACATGGGAGCCATCAAATTTAAAATTCCAAAGTTCGTCG
GGAAAACTAATCCGGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTTTTTGCTTGCCATAATTTTAGCGACGAACAAAAGGTTAGATTTTGTGTTGCCAAATTT
AAAGATTATCCTCAACTTGGTGGGACAAATTAA
Protein sequenceShow/hide protein sequence
MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRCRGRAYQNIQRRAQQEAPQVDRNMGAIKFKIPKFVGKTNPEEYIQWEKEVENVFACHNFSDEQKVRFCVAKF
KDYPQLGGTN