CuGenDBv2

Gene ID	PI0020562
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr12:13654211..13654808
RNA-Seq Expression	PI0020562
Synteny	PI0020562
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

1.7e-53

82.54

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISRHFNM+L  V+RLHD L+KKPQPVPN CTD RWR FENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

4.8e-53

81.75

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISRHFNM+L  V+RLH+ L+KKPQPVPN CTD RWR FENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.7e-53

82.54

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISRHFNM+L  V+RLHD L+KKPQPVPN CTD RWR FENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

KAA0061842.1 retrotransposon protein [Cucumis melo var. makuwa]

8.2e-53

81.75

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL STKVVDV+EMVAMFLH+LAH+VKNRV+QREF+RS ETISRHFNM+L  V+RLH+ L+KKPQPVPN CTD RWR FENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]

2.6e-54

82.54

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISRHFNM+L  V+RLH+ L+KKPQPVPN CTD RWRCFENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

8.0e-54

82.54

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISRHFNM+L  V+RLHD L+KKPQPVPN CTD RWR FENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

A0A5A7TXW1 Retrotransposon protein

8.0e-54

82.54

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISRHFNM+L  V+RLHD L+KKPQPVPN CTD RWR FENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

A0A5A7V0W7 Retrotransposon protein

4.0e-53

81.75

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL STKVVDV+EMVAMFLH+LAH+VKNRV+QREF+RS ETISRHFNM+L  V+RLH+ L+KKPQPVPN CTD RWR FENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

A0A5A7VG29 Retrotransposon protein

1.2e-54

82.54

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISRHFNM+L  V+RLH+ L+KKPQPVPN CTD RWRCFENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

A0A5D3BDX0 Retrotransposon protein

2.3e-53

81.75

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Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG
        MDRR FAILCHLLRT+AGL ST+VVDV+EMVAMFLH+LAH+VKNRV+QREF+RSGETISRHFNM+L  V+RLH+ L+KKPQPVPN CTD RWR FENCLG
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLG

Query:  ALDGTYIKVNVAATKRASYRTRKGEV
        ALDGTYIKVNV A+ RA YRTRKGEV
Subjt:  ALDGTYIKVNVAATKRASYRTRKGEV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

1.6e-14

35.94

Show/hide

Query:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCT----DPRWRCFE
        MD+  F  LC LL+T   L  T  + ++  +A+FL ++ HN++ R VQ  F  SGETISRHFN +L  V+ +        QP  N+ T    DP    F+
Subjt:  MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCT----DPRWRCFE

Query:  NCLGALDGTYIKVNVAATKRASYRTRKG
        +C+G +D  +I V V   ++  +R   G
Subjt:  NCLGALDGTYIKVNVAATKRASYRTRKG

Sequences

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CDS sequence

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ATGGACAGGCGAACGTTTGCCATTCTGTGCCACTTGCTTAGGACGGTCGCTGGGTTAGCCTCGACTAAAGTCGTAGACGTTAAGGAGATGGTGGCGATGTTCCTTCACGT
CCTAGCACACAATGTGAAGAATCGAGTGGTCCAGCGGGAGTTCGTGCGGTCCGGTGAGACAATTTCAAGGCATTTCAACATGTTGTTGACGACCGTCGTACGTCTTCATG
ACGCGTTGATAAAAAAACCACAACCAGTACCGAACAACTGCACAGATCCCCGTTGGCGTTGTTTCGAGAACTGTCTTGGTGCACTAGATGGCACGTACATCAAGGTAAAC
GTAGCGGCCACCAAGCGAGCATCGTATAGAACGCGGAAGGGGGAAGTGATTCTTAAAAATCGTTTCGTAAATATGAATTTAGGTTCTAAGTATGCGACTGAAACAATTGG
GCGATCAGGCAAGCATCATGCGTTAAAAAGGGCAGAGCTAAACCTATGCGTTGCAAGTTTACAAATGATATTTCGTTAA

mRNA sequence

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Protein sequence

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MDRRTFAILCHLLRTVAGLASTKVVDVKEMVAMFLHVLAHNVKNRVVQREFVRSGETISRHFNMLLTTVVRLHDALIKKPQPVPNNCTDPRWRCFENCLGALDGTYIKVN
VAATKRASYRTRKGEVILKNRFVNMNLGSKYATETIGRSGKHHALKRAELNLCVASLQMIFR

PI0020562 (gene) of Melon (PI 482460) v1 genome