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PI0020564 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020564
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:13801019..13801863
RNA-Seq ExpressionPI0020564
SyntenyPI0020564
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]2.5e-2148.44Show/hide
Query:  WTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKELMASNRRIEENNLHDAWSGMLKSSYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGR-------S
        +T++ E R+    +Q+IEKF+KKFF PHEN +R+K++  S++ I+          MLKSSY QIKTT   M +NNEEWDDDDFD+R+ G G+       +
Subjt:  WTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKELMASNRRIEENNLHDAWSGMLKSSYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGR-------S

Query:  DEGMDKNVVVVLQGQMTAINNLLKSMAI
        ++G DKNVVV  QG M  +NN+L+SMA+
Subjt:  DEGMDKNVVVVLQGQMTAINNLLKSMAI

KAA0061983.1 uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]2.5e-2137.36Show/hide
Query:  LPPQVAQEQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKE
        +P   A      Y+A +L RPIRSYA P+LY FN GIAYP FG ++            +D AKRW N++E  EV TW+ LIEKF+KKFFP  +  +R+++
Subjt:  LPPQVAQEQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKE

Query:  LMASNRRIEENNLHDAWS-----------------------------------------GMLKSSYNQIKTTLDTMTSNNEE
        L+   +R +  NLHDAWS                                         G+L+SSYNQIK  LD+M +N+++
Subjt:  LMASNRRIEENNLHDAWS-----------------------------------------GMLKSSYNQIKTTLDTMTSNNEE

TYK30531.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.3e-1744.92Show/hide
Query:  LPPQVAQEQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKE
        +P   A      Y+A +L RPIRSYA P+LY FN GIAY  FG +             +D AKRW N++E  EV TW+ LIEKF+KKFFP  +  +R+++
Subjt:  LPPQVAQEQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKE

Query:  LMASNRRIEENNLHDAWS
        L+   ++ +  NLHDAWS
Subjt:  LMASNRRIEENNLHDAWS

XP_038887458.1 uncharacterized protein LOC120077591 [Benincasa hispida]1.4e-1628.57Show/hide
Query:  DNNNRSVLPPQVAQ-----EQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVF----------------------------------------------
        DNNN     P+  Q      Q+  ++A D + PIR+YAAPNLY+F+ GI+ P+                                               
Subjt:  DNNNRSVLPPQVAQ-----EQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVF----------------------------------------------

Query:  -GISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKELMASNRRIEENNLHDAW------------------------
         GI+   +R  LFP TLRDKAKRW ++LE  E+ + DQL+E F+KKFFPP  NTRR+K ++ +  +++   L  AW                        
Subjt:  -GISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKELMASNRRIEENNLHDAW------------------------

Query:  -SGMLKS----------------SYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGRSDEG-MDKNVVVVLQGQMTAINNLLKSMAIS
         +G+ +S                +Y + K  LD ++ N ++W DD +  R   R R+D   +  N +  L  QM  + +LL+ MA++
Subjt:  -SGMLKS----------------SYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGRSDEG-MDKNVVVVLQGQMTAINNLLKSMAIS

XP_038902418.1 uncharacterized protein LOC120089063 [Benincasa hispida]1.8e-1633.94Show/hide
Query:  YPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKELMASNRRIEENNLHDAW-----------SGMLKSSYNQ
        + + G++ E +R  LFP TL+D+AKRW  +LE  E+ +W QL+E+F+KKFFPP  N +R K+++   ++ E   L  AW            G +  +Y +
Subjt:  YPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKELMASNRRIEENNLHDAW-----------SGMLKSSYNQ

Query:  IKTTLDTMTSNNEEWDDDDFDNRRRGRGRSDEGMDKNVVVV------LQGQMTAINNLLKSMAIS
         K  LD ++ N  +W DD     R GR  S++  ++ V+V+      L  QM  I ++L++MA++
Subjt:  IKTTLDTMTSNNEEWDDDDFDNRRRGRGRSDEGMDKNVVVV------LQGQMTAINNLLKSMAIS

TrEMBL top hitse value%identityAlignment
A0A5A7SYS5 Uncharacterized protein1.1e-1468.66Show/hide
Query:  MLKSSYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGRSDEGMDKNVVVVLQGQMTAINNLLKSMAIS
        MLKSS NQIK TLD+MT+NNEE DDDDF + RRGRG+++EG+D N VV LQGQMT +NNLL+S+ +S
Subjt:  MLKSSYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGRSDEGMDKNVVVVLQGQMTAINNLLKSMAIS

A0A5A7V1F3 Retrotrans_gag domain-containing protein1.2e-2137.36Show/hide
Query:  LPPQVAQEQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKE
        +P   A      Y+A +L RPIRSYA P+LY FN GIAYP FG ++            +D AKRW N++E  EV TW+ LIEKF+KKFFP  +  +R+++
Subjt:  LPPQVAQEQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKE

Query:  LMASNRRIEENNLHDAWS-----------------------------------------GMLKSSYNQIKTTLDTMTSNNEE
        L+   +R +  NLHDAWS                                         G+L+SSYNQIK  LD+M +N+++
Subjt:  LMASNRRIEENNLHDAWS-----------------------------------------GMLKSSYNQIKTTLDTMTSNNEE

A0A5D3DIM8 Uncharacterized protein1.2e-2148.44Show/hide
Query:  WTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKELMASNRRIEENNLHDAWSGMLKSSYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGR-------S
        +T++ E R+    +Q+IEKF+KKFF PHEN +R+K++  S++ I+          MLKSSY QIKTT   M +NNEEWDDDDFD+R+ G G+       +
Subjt:  WTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKELMASNRRIEENNLHDAWSGMLKSSYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGR-------S

Query:  DEGMDKNVVVVLQGQMTAINNLLKSMAI
        ++G DKNVVV  QG M  +NN+L+SMA+
Subjt:  DEGMDKNVVVVLQGQMTAINNLLKSMAI

A0A5D3E1V8 Uncharacterized protein4.1e-1467.16Show/hide
Query:  MLKSSYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGRSDEGMDKNVVVVLQGQMTAINNLLKSMAIS
        MLKSS NQIK +LD+MT+NNEE DDDDF + RRGRG+++EG+D N VV LQGQM A+NNLL+S+ +S
Subjt:  MLKSSYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGRSDEGMDKNVVVVLQGQMTAINNLLKSMAIS

A0A5D3E4P5 Retrovirus-related Pol polyprotein from transposon 17.66.1e-1844.92Show/hide
Query:  LPPQVAQEQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKE
        +P   A      Y+A +L RPIRSYA P+LY FN GIAY  FG +             +D AKRW N++E  EV TW+ LIEKF+KKFFP  +  +R+++
Subjt:  LPPQVAQEQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKE

Query:  LMASNRRIEENNLHDAWS
        L+   ++ +  NLHDAWS
Subjt:  LMASNRRIEENNLHDAWS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACAATAATAGAAGCGTACTACCTCCGCAAGTTGCCCAGGAACAGAATGTCGCCTACATGGCGCGTGATTTAGACAGACCAATTAGGTCTTATGCTGCACCCAA
CCTTTATAACTTCAACCTAGGAATCGCGTACCCTGTGTTCGGCATCTCGTCTGAGGAATTAAGATTCGCACTTTTCCCGTTAACTCTAAGGGATAAGGCAAAGAGATGGA
CGAACGCCTTGGAAGATCGCGAGGTGGGAACTTGGGATCAATTAATTGAAAAATTCATAAAGAAATTTTTCCCACCTCACGAAAACACAAGAAGAAAGAAGGAGCTCATG
GCTTCCAACAGAAGGATAGAAGAGAACAACCTACATGACGCGTGGAGTGGTATGTTGAAGAGTTCATACAACCAGATAAAGACAACGCTGGATACAATGACCAGTAATAA
CGAAGAATGGGATGATGATGATTTCGACAATCGCCGAAGAGGACGAGGAAGAAGTGATGAAGGAATGGATAAAAATGTTGTGGTGGTATTGCAAGGACAAATGACTGCGA
TCAATAATCTTCTAAAATCAATGGCAATATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAACAATAATAGAAGCGTACTACCTCCGCAAGTTGCCCAGGAACAGAATGTCGCCTACATGGCGCGTGATTTAGACAGACCAATTAGGTCTTATGCTGCACCCAA
CCTTTATAACTTCAACCTAGGAATCGCGTACCCTGTGTTCGGCATCTCGTCTGAGGAATTAAGATTCGCACTTTTCCCGTTAACTCTAAGGGATAAGGCAAAGAGATGGA
CGAACGCCTTGGAAGATCGCGAGGTGGGAACTTGGGATCAATTAATTGAAAAATTCATAAAGAAATTTTTCCCACCTCACGAAAACACAAGAAGAAAGAAGGAGCTCATG
GCTTCCAACAGAAGGATAGAAGAGAACAACCTACATGACGCGTGGAGTGGTATGTTGAAGAGTTCATACAACCAGATAAAGACAACGCTGGATACAATGACCAGTAATAA
CGAAGAATGGGATGATGATGATTTCGACAATCGCCGAAGAGGACGAGGAAGAAGTGATGAAGGAATGGATAAAAATGTTGTGGTGGTATTGCAAGGACAAATGACTGCGA
TCAATAATCTTCTAAAATCAATGGCAATATCGTAG
Protein sequenceShow/hide protein sequence
MDNNNRSVLPPQVAQEQNVAYMARDLDRPIRSYAAPNLYNFNLGIAYPVFGISSEELRFALFPLTLRDKAKRWTNALEDREVGTWDQLIEKFIKKFFPPHENTRRKKELM
ASNRRIEENNLHDAWSGMLKSSYNQIKTTLDTMTSNNEEWDDDDFDNRRRGRGRSDEGMDKNVVVVLQGQMTAINNLLKSMAIS