CuGenDBv2

Gene ID	PI0020576
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	nucleolin
Genome location	chr06:2421542..2422447
RNA-Seq Expression	PI0020576
Synteny	PI0020576
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004133977.1 nucleolin [Cucumis sativus]

2.5e-18

84.85

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPIA+DV EVE S EVRS+SK+SVP KKEEEVKDEEYGKDE LDLEDN+PESEP+EDGGFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

XP_008438311.1 PREDICTED: nucleolin [Cucumis melo]

1.3e-19

87.88

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPIA+DV EVE SHEVRS+SK+SVP KKEEEVKDEEYGKDE LDLEDN+PESEPEEDGGFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

XP_022146943.1 nucleolin [Momordica charantia]

3.8e-19

86.36

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPIAIDVEEVEP H+VRS+SK+SVP KKEEEVKD+EYGKDE LDLEDN+PESEPEE GGFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

XP_023526554.1 nucleolin-like isoform X2 [Cucurbita pepo subsp. pepo]

1.2e-17

86.36

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPIAIDVEEVEPSHEVR  SK+S P K EEEVKDEEYGKDE LDLEDN+PESEPEED GFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

XP_038895622.1 heterogeneous nuclear ribonucleoprotein Q isoform X1 [Benincasa hispida]

2.0e-20

89.39

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPI+IDVE+VEPSHEVRS+SK SVP KKEEEVKDEEYGKDE LDLEDN+PESEPEEDGGFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6P0 Uncharacterized protein

1.2e-18

84.85

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPIA+DV EVE S EVRS+SK+SVP KKEEEVKDEEYGKDE LDLEDN+PESEP+EDGGFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

A0A1S3AW67 nucleolin

6.4e-20

87.88

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPIA+DV EVE SHEVRS+SK+SVP KKEEEVKDEEYGKDE LDLEDN+PESEPEEDGGFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

A0A6J1CZX0 nucleolin

1.9e-19

86.36

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPIAIDVEEVEP H+VRS+SK+SVP KKEEEVKD+EYGKDE LDLEDN+PESEPEE GGFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

A0A6J1IQT6 nucleolin-like isoform X1

1.7e-17

84.85

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPIAIDVEEVEPSHEVRS  + + PRK EEEVKDEEYGKDE LDLEDN+PESEPEED GFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

A0A6J1IYN4 nucleolin-like isoform X2

1.3e-17

84.85

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Query:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE
        VVEEKQPIAIDVEEVEPSHEVR  SK+S P + EEEVKDEEYGKDE LDLEDN+PESEPEED GFE
Subjt:  VVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G44710.1 RNA-binding (RRM/RBD/RNP motifs) family protein

6.4e-04

33.08

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Query:  MPPRTVKIGAASSKGFPRDAEEAISSGGKGGCGRDGEGLGVVEEKQPIAIDVEEVEP----------------------SHEVRSNSKRSVPRKKEEEVK
        MPP+ VK G A+ +G  R    A+ +          E + + E     A++ +EV P                        E  +N    VP KKE EV+
Subjt:  MPPRTVKIGAASSKGFPRDAEEAISSGGKGGCGRDGEGLGVVEEKQPIAIDVEEVEP----------------------SHEVRSNSKRSVPRKKEEEVK

Query:  D--EEYGKDESLDLEDNEPESEPEEDGGFE
        +  +++GKDE LDL+DNEPE E EE GG E
Subjt:  D--EEYGKDESLDLEDNEPESEPEEDGGFE

Sequences

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CDS sequence

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ATGCCTCCAAGGACGGTAAAGATAGGCGCGGCATCCTCCAAGGGTTTCCCGAGGGACGCCGAAGAAGCAATATCATCCGGCGGAAAGGGAGGTTGCGGAAGAGATGGTGA
AGGTTTAGGAGTTGTTGAGGAGAAACAACCGATTGCTATAGACGTCGAGGAGGTCGAACCTTCGCACGAAGTCAGATCGAATTCAAAACGATCTGTTCCTCGTAAAAAAG
AAGAAGAAGTAAAGGATGAAGAATATGGGAAGGACGAGAGCTTGGATCTTGAAGATAATGAGCCCGAATCAGAACCTGAGGAGGATGGAGGGTTTGAAACATTATGGAGT
CGATAA

mRNA sequence

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Protein sequence

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MPPRTVKIGAASSKGFPRDAEEAISSGGKGGCGRDGEGLGVVEEKQPIAIDVEEVEPSHEVRSNSKRSVPRKKEEEVKDEEYGKDESLDLEDNEPESEPEEDGGFETLWS
R

PI0020576 (gene) of Melon (PI 482460) v1 genome