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PI0020585 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020585
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationtig00003626:604496..604840
RNA-Seq ExpressionPI0020585
SyntenyPI0020585
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006413 - translational initiation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025512.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]9.7e-3478.22Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAPSPRLLSEEE
        MAIPVVDEESPKELVPEAVQYVLDEYQDVM ESLPKTLPP RGI++EIELLPGARPPA NAY   PPELAEL+    EFLDAGFIRPAK P   LL ++ 
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAPSPRLLSEEE

Query:  R
        +
Subjt:  R

KAA0066834.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-3174.26Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAPSPRLLSEEE
        MAIPVVDEESPKELVPEAVQYVLDEYQDVM ESLPKTLPP RGI++EIELLPGARPP  N Y    PELAEL+    EFLD GFIRPAK P   LL ++ 
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAPSPRLLSEEE

Query:  R
        +
Subjt:  R

XP_022932976.1 polygalacturonase-like [Cucurbita moschata]1.2e-2871.43Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP
        MAIP+++E + +E VPE ++ VLD Y D+M ESLP+TLPPRRGI++EIELLPG +PPA NAYRMAPPELAEL K+LDE L AGFIRPAKAP
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP

XP_023524533.1 uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo]1.2e-2871.43Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP
        MAIP+++E + +E VPE ++ VLD Y D+M ESLP+TLPPRRGI++EIELLPG +PPA NAYRMAPPELAEL K+LDE L AGFIRPAKAP
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP

XP_023526180.1 uncharacterized protein LOC111789739 [Cucurbita pepo subsp. pepo]1.2e-2871.43Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP
        MAIP+++E + +E VPE ++ VLD Y D+M ESLP+TLPPRRGI++EIELLPG +PPA NAYRMAPPELAEL K+LDE L AGFIRPAKAP
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP

TrEMBL top hitse value%identityAlignment
A0A5A7SK59 RNA-directed DNA polymerase-like protein4.7e-3478.22Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAPSPRLLSEEE
        MAIPVVDEESPKELVPEAVQYVLDEYQDVM ESLPKTLPP RGI++EIELLPGARPPA NAY   PPELAEL+    EFLDAGFIRPAK P   LL ++ 
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAPSPRLLSEEE

Query:  R
        +
Subjt:  R

A0A5D3DWT3 Reverse transcriptase1.7e-3174.26Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAPSPRLLSEEE
        MAIPVVDEESPKELVPEAVQYVLDEYQDVM ESLPKTLPP RGI++EIELLPGARPP  N Y    PELAEL+    EFLD GFIRPAK P   LL ++ 
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAPSPRLLSEEE

Query:  R
        +
Subjt:  R

A0A6J1DLQ6 uncharacterized protein LOC1110223202.5e-2770.33Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP
        MAIPV +  + +ELVP  +Q VL+ Y DVM ++LPK LPPR GI++EIELLPGA+PPA NAYRMAPPELAEL K+LDE L+AGFIRPAKAP
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP

A0A6J1EWT2 aspartic proteinase PCS1-like5.9e-2971.43Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP
        MAIP+++E + +E VPE ++ VLD Y D+M ESLP+TLPPRRGI++EIELLPG +PPA NAYRMAPPELAEL K+LDE L AGFIRPAKAP
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP

A0A6J1EXV2 polygalacturonase-like5.9e-2971.43Show/hide
Query:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP
        MAIP+++E + +E VPE ++ VLD Y D+M ESLP+TLPPRRGI++EIELLPG +PPA NAYRMAPPELAEL K+LDE L AGFIRPAKAP
Subjt:  MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATCCCAGTGGTTGATGAGGAAAGTCCGAAAGAGCTAGTTCCGGAGGCAGTCCAGTATGTCTTAGACGAATACCAAGACGTAATGGGAGAGAGTTTGCCTAAGAC
TCTACCTCCACGAAGGGGGATAGAAAATGAGATAGAACTTCTACCCGGGGCGAGACCCCCTGCTTTGAATGCGTATCGCATGGCGCCGCCAGAATTGGCAGAACTTCTCA
AAGAGTTGGATGAGTTCTTGGACGCTGGGTTTATTAGACCTGCAAAAGCTCCGAGCCCCCGTCTTCTTTCAGAAGAAGAAAGACTTCCGTCTCCGCTTATGTATCGACTT
AAGAGGGCTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTATCCCAGTGGTTGATGAGGAAAGTCCGAAAGAGCTAGTTCCGGAGGCAGTCCAGTATGTCTTAGACGAATACCAAGACGTAATGGGAGAGAGTTTGCCTAAGAC
TCTACCTCCACGAAGGGGGATAGAAAATGAGATAGAACTTCTACCCGGGGCGAGACCCCCTGCTTTGAATGCGTATCGCATGGCGCCGCCAGAATTGGCAGAACTTCTCA
AAGAGTTGGATGAGTTCTTGGACGCTGGGTTTATTAGACCTGCAAAAGCTCCGAGCCCCCGTCTTCTTTCAGAAGAAGAAAGACTTCCGTCTCCGCTTATGTATCGACTT
AAGAGGGCTGAATAA
Protein sequenceShow/hide protein sequence
MAIPVVDEESPKELVPEAVQYVLDEYQDVMGESLPKTLPPRRGIENEIELLPGARPPALNAYRMAPPELAELLKELDEFLDAGFIRPAKAPSPRLLSEEERLPSPLMYRL
KRAE