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PI0020629 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020629
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:18930350..18931537
RNA-Seq ExpressionPI0020629
SyntenyPI0020629
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035621.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-3848.19Show/hide
Query:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG
        D SH  AKGLL KSF HYD+L YVFGKDR TG  AE+FAD+GSN P G+   + D   DT+ P MYS GL+MSP+D+  +R  R  E R  SS SKRK+ 
Subjt:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG

Query:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
        G A  + +I++ A+++ N+QL  I                        IPEL+  DR  LMRIL+RNV+DMKAFL++PD +K  Y ++IL+EN
Subjt:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

KAA0044843.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-3948.7Show/hide
Query:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG
        D SH  AKGLL KSF HYD+L YVFGKDR TG  AE+FAD+GSN P G+  F+ D   DT+ P MYS GL+MSP+D+  +R  R  E R  SS SKRK+ 
Subjt:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG

Query:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
        G A+ + +I++ A+++ N+QL  I                        IPEL+  DR  LMRI++RNV+DMKAFL++PD +K  Y +IIL+EN
Subjt:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-3848.69Show/hide
Query:  SHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQGGQ
        SH  AKGLL KSF HYD+L YVFGKDR TG  AE+FAD+GSN P G+  F+ D  +DT+   MYS GL+MSP+D+  +R  R  E R  SS SKRK+ G 
Subjt:  SHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQGGQ

Query:  AVQTMEIIQNAMDFVNDQLKAIG-----------------------IPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
        A  + +I++ AM++ N+QL  I                        IPEL+  DR  LMRI++RNV+DMKAFL++PD +K  Y +IIL+EN
Subjt:  AVQTMEIIQNAMDFVNDQLKAIG-----------------------IPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-4060Show/hide
Query:  CAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQGGQAVQTMEIIQNAMDFVNDQLKAI---------
        C ETF DVGSN P G++GFS D GND EIPMMYS+G+DM  +DI G+RPDRS EGRTGSS SKRKQGGQAV+TMEII+N M+  ND+LKAI         
Subjt:  CAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQGGQAVQTMEIIQNAMDFVNDQLKAI---------

Query:  --------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
                       IPELS +DRV  M+IL+ NV+DMKAFL I DELKL+Y TII ++N
Subjt:  --------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

KAA0065737.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-4049.74Show/hide
Query:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG
        D SH  AKGLL KSF HYD+L YVFGKDR TG  AE+FAD+GSN P G+  F+ D   DT+ P MYS GL+MSP+D+  +R  R  E R  SSESKRK+ 
Subjt:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG

Query:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
        G A  + +I++ A+++ N+QL  I                        IPEL+  DR  LMRIL+RNV+DMKAFL++PD +K  Y +IIL+EN
Subjt:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

TrEMBL top hitse value%identityAlignment
A0A5A7TMW5 Retrotransposon protein1.2e-3948.7Show/hide
Query:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG
        D SH  AKGLL KSF HYD+L YVFGKDR TG  AE+FAD+GSN P G+  F+ D   DT+ P MYS GL+MSP+D+  +R  R  E R  SS SKRK+ 
Subjt:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG

Query:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
        G A+ + +I++ A+++ N+QL  I                        IPEL+  DR  LMRI++RNV+DMKAFL++PD +K  Y +IIL+EN
Subjt:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

A0A5A7TYQ6 Retrotransposon protein9.8e-3948.69Show/hide
Query:  SHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQGGQ
        SH  AKGLL KSF HYD+L YVFGKDR TG  AE+FAD+GSN P G+  F+ D  +DT+   MYS GL+MSP+D+  +R  R  E R  SS SKRK+ G 
Subjt:  SHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQGGQ

Query:  AVQTMEIIQNAMDFVNDQLKAIG-----------------------IPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
        A  + +I++ AM++ N+QL  I                        IPEL+  DR  LMRI++RNV+DMKAFL++PD +K  Y +IIL+EN
Subjt:  AVQTMEIIQNAMDFVNDQLKAIG-----------------------IPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

A0A5A7V469 Retrotransposon protein8.0e-4160Show/hide
Query:  CAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQGGQAVQTMEIIQNAMDFVNDQLKAI---------
        C ETF DVGSN P G++GFS D GND EIPMMYS+G+DM  +DI G+RPDRS EGRTGSS SKRKQGGQAV+TMEII+N M+  ND+LKAI         
Subjt:  CAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQGGQAVQTMEIIQNAMDFVNDQLKAI---------

Query:  --------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
                       IPELS +DRV  M+IL+ NV+DMKAFL I DELKL+Y TII ++N
Subjt:  --------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

A0A5A7VF53 Retrotransposon protein3.0e-4049.74Show/hide
Query:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG
        D SH  AKGLL KSF HYD+L YVFGKDR TG  AE+FAD+GSN P G+  F+ D   DT+ P MYS GL+MSP+D+  +R  R  E R  SSESKRK+ 
Subjt:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG

Query:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
        G A  + +I++ A+++ N+QL  I                        IPEL+  DR  LMRIL+RNV+DMKAFL++PD +K  Y +IIL+EN
Subjt:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

A0A5D3DPR5 Retrotransposon protein2.2e-3848.19Show/hide
Query:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG
        D SH  AKGLL KSF HYD+L YVFGKDR TG  AE+FAD+GSN P G+   + D   DT+ P MYS GL+MSP+D+  +R  R  E R  SS SKRK+ 
Subjt:  DLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQG

Query:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN
        G A  + +I++ A+++ N+QL  I                        IPEL+  DR  LMRIL+RNV+DMKAFL++PD +K  Y ++IL+EN
Subjt:  GQAVQTMEIIQNAMDFVNDQLKAI-----------------------GIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCATGAATCCGACCTAAGTCATCATGTTGCGAAGGGCCTCCTAAAGAAGTCATTTTCCCATTACGACGACCTGTGCTACGTATTTGGAAAGGATCGTGAGACGGG
AGCTTGCGCGGAGACATTCGCCGATGTGGGATCAAATGTGCCTGGAGGGTTCAAGGGATTTTCCGTTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTGAGG
GACTAGACATGTCGCCTAATGACATCGCGGGCTCACGACCCGATCGCTCAATGGAGGGTAGGACTGGTTCAAGCGAATCGAAGAGGAAGCAGGGAGGCCAGGCAGTACAG
ACTATGGAAATCATTCAAAATGCTATGGACTTCGTTAACGACCAATTGAAGGCCATTGGCATCCCTGAACTGAGTACCCACGACAGGGTGCACCTTATGCGGATACTGCT
GCGCAATGTGAACGACATGAAAGCATTCTTGAAGATACCCGATGAGCTTAAGCTGGAATACTACACGATCATTCTTGAAGAGAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCCATGAATCCGACCTAAGTCATCATGTTGCGAAGGGCCTCCTAAAGAAGTCATTTTCCCATTACGACGACCTGTGCTACGTATTTGGAAAGGATCGTGAGACGGG
AGCTTGCGCGGAGACATTCGCCGATGTGGGATCAAATGTGCCTGGAGGGTTCAAGGGATTTTCCGTTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTGAGG
GACTAGACATGTCGCCTAATGACATCGCGGGCTCACGACCCGATCGCTCAATGGAGGGTAGGACTGGTTCAAGCGAATCGAAGAGGAAGCAGGGAGGCCAGGCAGTACAG
ACTATGGAAATCATTCAAAATGCTATGGACTTCGTTAACGACCAATTGAAGGCCATTGGCATCCCTGAACTGAGTACCCACGACAGGGTGCACCTTATGCGGATACTGCT
GCGCAATGTGAACGACATGAAAGCATTCTTGAAGATACCCGATGAGCTTAAGCTGGAATACTACACGATCATTCTTGAAGAGAACGTTTGA
Protein sequenceShow/hide protein sequence
MIHESDLSHHVAKGLLKKSFSHYDDLCYVFGKDRETGACAETFADVGSNVPGGFKGFSVDYGNDTEIPMMYSEGLDMSPNDIAGSRPDRSMEGRTGSSESKRKQGGQAVQ
TMEIIQNAMDFVNDQLKAIGIPELSTHDRVHLMRILLRNVNDMKAFLKIPDELKLEYYTIILEENV