; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0020638 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020638
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:11513797..11514222
RNA-Seq ExpressionPI0020638
SyntenyPI0020638
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.8e-4671.43Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQ  PLKV KCGVC LVGHPNDKCP++IEDVN++RK DP+  TYNSGWRDNPNLRWGNDNQK TQA  +SSN                    
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        +EMKQQMTQLTT ISKM+GKGKLPAQPD+ANVSAISLRSG
Subjt:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-4671.22Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN-------------------K
        MTTLLTSFVQ  PLKV KCGVCGLVG+PNDKCP +IEDVN++R+ DPH  TYN GWRDNPNLRWGNDNQK TQA  +SSN                   +
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN-------------------K

Query:  EMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        EMKQQMTQLTTV+SKM+GKGKLPAQPDH NVSAISLRSG
Subjt:  EMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

KAA0051064.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-4671.43Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MT+LLTSFVQ  PLKV KCGVCGLVGHPNDKCP +IEDVN+ R+ DPH  TYNSGWRDNPNLRWGNDNQK TQA  +SSN                    
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        +EMKQQMTQLTT ISKM+GKGKL AQPDHANVSAISLRSG
Subjt:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-4672.14Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQ  P KV KCGVCGLVGHPNDKC  +IEDVN++R+ DPHS TYNSGWRDNPNLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        +EMKQQMTQLTT ISKM+GKGKLPAQPD+ANVSAISLRSG
Subjt:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-4672.14Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQ  P KV KCGVCGLVGHPNDKCP +IEDVN++R+ DPHS TYNSGWRDN NLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        ++MKQQMTQLTT ISKM+GKGKLPAQPDHANVSAISLRSG
Subjt:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein6.7e-4771.22Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN-------------------K
        MTTLLTSFVQ  PLKV KCGVCGLVG+PNDKCP +IEDVN++R+ DPH  TYN GWRDNPNLRWGNDNQK TQA  +SSN                   +
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN-------------------K

Query:  EMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        EMKQQMTQLTTV+SKM+GKGKLPAQPDH NVSAISLRSG
Subjt:  EMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

A0A5A7U6X0 Retrotransposon gag protein8.7e-4771.43Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MT+LLTSFVQ  PLKV KCGVCGLVGHPNDKCP +IEDVN+ R+ DPH  TYNSGWRDNPNLRWGNDNQK TQA  +SSN                    
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        +EMKQQMTQLTT ISKM+GKGKL AQPDHANVSAISLRSG
Subjt:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

A0A5A7V0Q7 Retrotransposon gag protein8.7e-4772.14Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQ  P KV KCGVCGLVGHPNDKC  +IEDVN++R+ DPHS TYNSGWRDNPNLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        +EMKQQMTQLTT ISKM+GKGKLPAQPD+ANVSAISLRSG
Subjt:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

A0A5D3CB46 Retrotransposon gag protein6.7e-4772.14Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQ  P KV KCGVCGLVGHPNDKCP +IEDVN++R+ DPHS TYNSGWRDN NLRWGNDNQK TQA S+SSN                    
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        ++MKQQMTQLTT ISKM+GKGKLPAQPDHANVSAISLRSG
Subjt:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

E5GBZ4 Retrotransposon gag protein8.7e-4771.43Show/hide
Query:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------
        MTTLLTSFVQ  PLKV KCGVC LVGHPNDKCP++IEDVN++RK DP+  TYNSGWRDNPNLRWGNDNQK TQA  +SSN                    
Subjt:  MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSN--------------------

Query:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG
        +EMKQQMTQLTT ISKM+GKGKLPAQPD+ANVSAISLRSG
Subjt:  KEMKQQMTQLTTVISKMEGKGKLPAQPDHANVSAISLRSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTCTTCTTACTTCTTTTGTGCAAAGTGGTCCCCTCAAAGTAGCCAAATGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAGTGCCCCGACTTGATTGA
GGATGTAAATGTCATTCGTAAGGACGATCCCCACAGTAAAACATACAATTCGGGATGGAGAGATAACCCAAACTTGAGATGGGGAAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTCTTCAAACAAAGAGATGAAACAACAAATGACTCAACTCACCACCGTCATAAGCAAGATGGAAGGGAAAGGTAAGCTTCCGGCCCAACCGGATCATGCA
AATGTGAGTGCCATCTCACTTAGAAGTGGTTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTCTTCTTACTTCTTTTGTGCAAAGTGGTCCCCTCAAAGTAGCCAAATGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAGTGCCCCGACTTGATTGA
GGATGTAAATGTCATTCGTAAGGACGATCCCCACAGTAAAACATACAATTCGGGATGGAGAGATAACCCAAACTTGAGATGGGGAAATGACAACCAAAAGCCCACCCAAG
CAACATCCTCCTCTTCAAACAAAGAGATGAAACAACAAATGACTCAACTCACCACCGTCATAAGCAAGATGGAAGGGAAAGGTAAGCTTCCGGCCCAACCGGATCATGCA
AATGTGAGTGCCATCTCACTTAGAAGTGGTTGGTAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQSGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKDDPHSKTYNSGWRDNPNLRWGNDNQKPTQATSSSSNKEMKQQMTQLTTVISKMEGKGKLPAQPDHA
NVSAISLRSGW