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PI0020667 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020667
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr04:17898862..17899350
RNA-Seq ExpressionPI0020667
SyntenyPI0020667
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-5269.57Show/hide
Query:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ+MF Q+S QI+H+A+KY+YNARM EG SV
Subjt:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV

Query:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        REHVL+MMV FNVAE NG VIDE SQ          SFLQFRSNAVMNKI YT+T LLNEL
Subjt:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-5269.57Show/hide
Query:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ+MF Q+S QI+H+A+KY+YNARM EG SV
Subjt:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV

Query:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        REHVL+MMV FNVAE NG VIDE SQ          SFLQFRSNAVMNKI YT+T LLNEL
Subjt:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-5372.22Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQS
        MILVI DLRFVLMEECPP P +NASQ+V+DA+DHWTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL++MF Q SIQI+ EAIKYVYNARMKEGQS
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQS

Query:  VREHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        VREHVL M+V FNVAE N  + DE+SQ          SFLQF SN  MNKIEY MT LL EL
Subjt:  VREHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-5269.57Show/hide
Query:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ+MF Q+S QI+H+A+KY+YNARM EG SV
Subjt:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV

Query:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        REHVL+MMV FNVAE NG VIDE SQ          SFLQFRSNAVMNKI YT+T LLNEL
Subjt:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-5372.22Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQS
        MILVI DLRFVLMEECPP P +NASQ+V+DA+DHWTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL++MF Q SIQI+ EAIKYVYNARMKEGQS
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQS

Query:  VREHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        VREHVL M+V FNVAE N  + DE+SQ          SFLQF SN  MNKIEY MT LL EL
Subjt:  VREHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein6.0e-5369.57Show/hide
Query:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ+MF Q+S QI+H+A+KY+YNARM EG SV
Subjt:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV

Query:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        REHVL+MMV FNVAE NG VIDE SQ          SFLQFRSNAVMNKI YT+T LLNEL
Subjt:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

A0A5A7TU93 Gag/pol protein6.0e-5369.57Show/hide
Query:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ+MF Q+S QI+H+A+KY+YNARM EG SV
Subjt:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV

Query:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        REHVL+MMV FNVAE NG VIDE SQ          SFLQFRSNAVMNKI YT+T LLNEL
Subjt:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

A0A5A7VA67 Gag/pol protein1.6e-5372.22Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQS
        MILVI DLRFVLMEECPP P +NASQ+V+DA+DHWTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL++MF Q SIQI+ EAIKYVYNARMKEGQS
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQS

Query:  VREHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        VREHVL M+V FNVAE N  + DE+SQ          SFLQF SN  MNKIEY MT LL EL
Subjt:  VREHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

A0A5D3CPJ6 Gag/pol protein6.0e-5369.57Show/hide
Query:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV
        +L+IDDLRFVL+EECP  P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQ+MF Q+S QI+H+A+KY+YNARM EG SV
Subjt:  ILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSV

Query:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        REHVL+MMV FNVAE NG VIDE SQ          SFLQFRSNAVMNKI YT+T LLNEL
Subjt:  REHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

A0A5D3D0D9 Gag/pol protein1.6e-5372.22Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQS
        MILVI DLRFVLMEECPP P +NASQ+V+DA+DHWTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL++MF Q SIQI+ EAIKYVYNARMKEGQS
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQS

Query:  VREHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL
        VREHVL M+V FNVAE N  + DE+SQ          SFLQF SN  MNKIEY MT LL EL
Subjt:  VREHVLDMMVQFNVAETNGVVIDEQSQ----------SFLQFRSNAVMNKIEYTMTILLNEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCACTGGACAAA
GGCCAATGAAAAGGCTCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGTAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGAAGA
TGTTTAGACAATCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTC
CAATTCAACGTGGCAGAAACGAACGGGGTGGTCATTGACGAGCAAAGTCAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTAT
CCTCCTTAACGAGTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCACTGGACAAA
GGCCAATGAAAAGGCTCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGTAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGAAGA
TGTTTAGACAATCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTC
CAATTCAACGTGGCAGAAACGAACGGGGTGGTCATTGACGAGCAAAGTCAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTAT
CCTCCTTAACGAGTTATAG
Protein sequenceShow/hide protein sequence
MILVIDDLRFVLMEECPPSPVRNASQTVRDAHDHWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQKMFRQSSIQIRHEAIKYVYNARMKEGQSVREHVLDMMV
QFNVAETNGVVIDEQSQSFLQFRSNAVMNKIEYTMTILLNEL