CuGenDBv2

Gene ID	PI0020740
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	VQ domain-containing protein
Genome location	chr05:2093966..2094704
RNA-Seq Expression	PI0020740
Synteny	PI0020740
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]

2.8e-59

86.99

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Query:  MEN-FTTLPTNFHHKKVSQISNK-ATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDA-FDQSVEDFNHVFYPPPP-SSTPGVSFDPK
        MEN  TTLPT+FHH+KVSQ SNK  TIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQ+SPDHDA FDQSV+DFNH FYPPPP SSTPGVSFDP+
Subjt:  MEN-FTTLPTNFHHKKVSQISNK-ATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDA-FDQSVEDFNHVFYPPPP-SSTPGVSFDPK

Query:  DCRYDSASGDVLF-DRIGDGDEERYWRGEMDGSFSGFQASSCVNIW
        DC Y SASGDVLF DRI DGDE RYWRGEM+GSFSGFQASSCVNIW
Subjt:  DCRYDSASGDVLF-DRIGDGDEERYWRGEMDGSFSGFQASSCVNIW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]

1.7e-64

89.44

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Query:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY
        MENFTTLP+NFHHKKVSQ+SNKATID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQ+SPDHD  DQSV+DFNHVFYPPPPSS+PGVSFDPKDC  
Subjt:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY

Query:  DSASGDVLFDRIGDGDEERYWRGEMD-GSFSGFQASSCVNIW
        +SASGDVLFDRI DGDE RYWRGEM+ GSFSGFQASSCVNIW
Subjt:  DSASGDVLFDRIGDGDEERYWRGEMD-GSFSGFQASSCVNIW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.3e-23

54.61

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Query:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY
        MEN  +LP +  H+K+   + +AT+   NKPIKVKYISSPMMVKA+NE EFRAIVQKLTGQ+S D DAFD+S ++FNH F PP  + T   SFD KDC Y
Subjt:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY

Query:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNIW
        D  S D  +D I          GEM  S  GFQA S V++W
Subjt:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNIW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]

1.3e-24

56.03

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Query:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY
        MEN  +LP +  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQ+S D DAFD+S ++FNH F PP  + T   SFD KDC Y
Subjt:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY

Query:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNIW
        D  S D  +D IG         GEM  S  GFQA S V++W
Subjt:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNIW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]

1.4e-37

78.95

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Query:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRYDSASGDVLFDRIGDGDEERYWRGEMDG
        QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQ+SP HDAFDQS EDFN VFY PPPSS    SFDPKDC Y SASGDVLFD          W+GEM+G
Subjt:  QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRYDSASGDVLFDRIGDGDEERYWRGEMDG

Query:  SFSGFQASSCVNIW
        SFSGFQASSCVN W
Subjt:  SFSGFQASSCVNIW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LFF9 VQ domain-containing protein

8.3e-65

89.44

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Query:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY
        MENFTTLP+NFHHKKVSQ+SNKATID QNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQ+SPDHD  DQSV+DFNHVFYPPPPSS+PGVSFDPKDC  
Subjt:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY

Query:  DSASGDVLFDRIGDGDEERYWRGEMD-GSFSGFQASSCVNIW
        +SASGDVLFDRI DGDE RYWRGEM+ GSFSGFQASSCVNIW
Subjt:  DSASGDVLFDRIGDGDEERYWRGEMD-GSFSGFQASSCVNIW

A0A1R3HNT0 VQ motif-containing protein

2.7e-07

36.64

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Query:  PTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRYDSASGDV
        P N HH     + +K     +  PIKV YI SP MVK +N  EFRAIVQ+LTG+NS   D  +Q   D +    P   ++    S    D R    S  V
Subjt:  PTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRYDSASGDV

Query:  LFDRIGDGDEERYWRGEMDGSFSGFQASSCV
            + + DE+  WRG  +    GFQ+SS +
Subjt:  LFDRIGDGDEERYWRGEMDGSFSGFQASSCV

A0A5A7VDH6 VQ motif-containing protein

1.4e-59

86.99

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Query:  MEN-FTTLPTNFHHKKVSQISNK-ATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDA-FDQSVEDFNHVFYPPPP-SSTPGVSFDPK
        MEN  TTLPT+FHH+KVSQ SNK  TIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQ+SPDHDA FDQSV+DFNH FYPPPP SSTPGVSFDP+
Subjt:  MEN-FTTLPTNFHHKKVSQISNK-ATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDA-FDQSVEDFNHVFYPPPP-SSTPGVSFDPK

Query:  DCRYDSASGDVLF-DRIGDGDEERYWRGEMDGSFSGFQASSCVNIW
        DC Y SASGDVLF DRI DGDE RYWRGEM+GSFSGFQASSCVNIW
Subjt:  DCRYDSASGDVLF-DRIGDGDEERYWRGEMDGSFSGFQASSCVNIW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like

1.8e-19

58.62

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Query:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSV----EDFNHVFYPPPPSSTPGVSFDPKDCRYDSASGDVLFDRIGDGDEERYWRGEM
        KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQNSPD DAF+       E+ NH FYPPPPS+   VS DPK   Y   SG     ++G+  E  + + EM
Subjt:  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSV----EDFNHVFYPPPPSSTPGVSFDPKDCRYDSASGDVLFDRIGDGDEERYWRGEM

Query:  DGSFSGFQASSCVNIW
         G FSGFQA SCVN +
Subjt:  DGSFSGFQASSCVNIW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like

6.4e-25

56.03

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Query:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY
        MEN  +LP +  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQ+S D DAFD+S ++FNH F PP  + T   SFD KDC Y
Subjt:  MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY

Query:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNIW
        D  S D  +D IG         GEM  S  GFQA S V++W
Subjt:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNIW

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

1.6e-04

31.3

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Query:  NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFD---PKDCRYDSASGDVLFDRIGDGDEERYWRGEM
        +KPIKV+YIS+PM V+    S+FR +VQ+LTGQ++ D                PP P++   V        +   +   G+V  +     DEE +   +M
Subjt:  NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFD---PKDCRYDSASGDVLFDRIGDGDEERYWRGEM

Query:  DGSFSGFQASSCVNI
            SGF +S   N+
Subjt:  DGSFSGFQASSCVNI

Q9LDH1 Sigma factor binding protein 1, chloroplastic

1.1e-05

32.14

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Query:  TNFHHKKVSQISNKATIDQQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPD---HDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY
        T+   KK S +S K+   ++     NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ++ D      +  S +D  H   PP  +  P V         
Subjt:  TNFHHKKVSQISNKATIDQQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPD---HDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY

Query:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNI
        DS   + L        E+ +   +M   FSGF ++   N+
Subjt:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNI

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

1.1e-05

31.3

Show/hide

Query:  NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFD---PKDCRYDSASGDVLFDRIGDGDEERYWRGEM
        +KPIKV+YIS+PM V+    S+FR +VQ+LTGQ++ D                PP P++   V        +   +   G+V  +     DEE +   +M
Subjt:  NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFD---PKDCRYDSASGDVLFDRIGDGDEERYWRGEM

Query:  DGSFSGFQASSCVNI
            SGF +S   N+
Subjt:  DGSFSGFQASSCVNI

AT3G56710.1 sigma factor binding protein 1

7.8e-07

32.14

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Query:  TNFHHKKVSQISNKATIDQQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPD---HDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY
        T+   KK S +S K+   ++     NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ++ D      +  S +D  H   PP  +  P V         
Subjt:  TNFHHKKVSQISNKATIDQQ-----NKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPD---HDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRY

Query:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNI
        DS   + L        E+ +   +M   FSGF ++   N+
Subjt:  DSASGDVLFDRIGDGDEERYWRGEMDGSFSGFQASSCVNI

Sequences

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CDS sequence

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ATGGAGAATTTCACAACCCTTCCTACTAATTTTCATCATAAAAAAGTTAGCCAAATTTCCAACAAAGCAACAATTGATCAACAAAACAAGCCCATCAAAGTGAAGTACAT
TTCCAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGAACTCTCCTGATCATGATGCTTTTGATCAATCAGTTG
AAGATTTTAACCATGTTTTTTATCCGCCACCACCCTCGTCCACCCCCGGGGTTTCTTTCGATCCTAAGGATTGTCGTTATGATTCGGCCTCCGGTGATGTACTCTTCGAT
CGGATTGGGGATGGTGATGAAGAGCGGTACTGGCGAGGTGAAATGGACGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGA

mRNA sequence

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ACGAAACTCCCCTTTCTTAGCACATTACAAAATGCTACAAAAACCCCTCAAATTGTCTCATCACAAACAACAAATCAAATTTCCCTTTTAATTCCTCTCCCAATTTTTCC
TCTTTTCTTTATGGAGAATTTCACAACCCTTCCTACTAATTTTCATCATAAAAAAGTTAGCCAAATTTCCAACAAAGCAACAATTGATCAACAAAACAAGCCCATCAAAG
TGAAGTACATTTCCAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGAACTCTCCTGATCATGATGCTTTTGAT
CAATCAGTTGAAGATTTTAACCATGTTTTTTATCCGCCACCACCCTCGTCCACCCCCGGGGTTTCTTTCGATCCTAAGGATTGTCGTTATGATTCGGCCTCCGGTGATGT
ACTCTTCGATCGGATTGGGGATGGTGATGAAGAGCGGTACTGGCGAGGTGAAATGGACGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGATGGA
GATGAAGGAGAGGAAAAGATGATGGATGATGAGTGATATCATGGCTTTTTTAGCTTTAGTTTTTGTGGGACTTTGTATTTAGTATTTGAGAGGTTATATATGAATATATA
GATTTGAATTTTCTTTTATTGATTATAGAACACATTGGTGAAATACTAATTACTACGTCTTTTATCGTAACCATTTTAT

Protein sequence

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MENFTTLPTNFHHKKVSQISNKATIDQQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQNSPDHDAFDQSVEDFNHVFYPPPPSSTPGVSFDPKDCRYDSASGDVLFD
RIGDGDEERYWRGEMDGSFSGFQASSCVNIW

PI0020740 (gene) of Melon (PI 482460) v1 genome