CuGenDBv2

Gene ID	PI0020756
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	General transcription factor IIH subunit 5-like
Genome location	chr06:28094158..28097399
RNA-Seq Expression	PI0020756
Synteny	PI0020756
Gene Ontology terms	GO:0006294 - nucleotide-excision repair, preincision complex assembly (biological process) GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0000439 - transcription factor TFIIH core complex (cellular component) GO:0005669 - transcription factor TFIID complex (cellular component) GO:0005675 - transcription factor TFIIH holo complex (cellular component)
InterPro domains	IPR009400 - TFIIH subunit TTDA/Tfb5 IPR035935 - TFB5-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596831.1 General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-30

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Query:  GVFDIMVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        G FDIMVNAIKG+FISCDIPM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  GVFDIMVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

KAG7028360.1 RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-30

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Query:  GVFDIMVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        G FDIMVNAIKG+FISCDIPM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  GVFDIMVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

XP_004147953.1 general transcription and DNA repair factor IIH subunit TFB5 [Cucumis sativus]

9.8e-31

98.57

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFR+QISYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

XP_008448918.1 PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo]

4.4e-31

98.57

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKGMFISCD+PMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

XP_038876808.1 general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida]

2.8e-30

95.71

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCD+PMAQFIINYNASLP SHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4F5 Uncharacterized protein

4.7e-31

98.57

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFR+QISYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

A0A1S3BK87 RNA polymerase II transcription factor B subunit 5

2.1e-31

98.57

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKGMFISCD+PMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

A0A6J1DFN4 RNA polymerase II transcription factor B subunit 5

4.1e-27

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCD+PMAQFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NAISEFRDQ SYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

A0A6J1FX17 RNA polymerase II transcription factor B subunit 5

9.9e-29

92.86

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCDIPM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

A0A6J1L2N1 RNA polymerase II transcription factor B subunit 5 isoform X1

9.9e-29

92.86

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+FISCDIPM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

SwissProt top hits

e value

%identity

Alignment

Q2T9Z5 General transcription factor IIH subunit 5

5.1e-06

34.85

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY
        MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E  DQ ++
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY

Q5ZKH0 General transcription factor IIH subunit 5

1.7e-06

37.88

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY
        MVN +KG+ I CD  M QF++  + S     +FII  LD TH+FV   + + ++  + E  DQ S+
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY

Q6NNM0 General transcription and DNA repair factor IIH subunit TFB5

3.7e-25

74.29

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+F+SCDIPM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+FRDQ SYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

Q6ZYL4 General transcription factor IIH subunit 5

5.1e-06

34.85

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY
        MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E  DQ ++
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY

Q8K2X8 General transcription factor IIH subunit 5

1.1e-05

33.33

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY
        MVN +KG+ I CD  M QF++  + +     +FII  +D+TH+FV   + ++++  + E  DQ ++
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISY

Arabidopsis top hits

e value

%identity

Alignment

AT1G12400.1 Nucleotide excision repair, TFIIH, subunit TTDA

2.7e-26

74.29

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
        MVNAIKG+F+SCDIPM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+FRDQ SYEKPT
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT

AT1G62886.1 Nucleotide excision repair, TFIIH, subunit TTDA

3.5e-18

61.43

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Query:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHI--LDNTHMFVQPHVADMIRNAISEFRDQISYEK
        MVN+IKG+FISCD+PMAQFI + N SLPAS +FII +  LD T MFV+P+  +MIR+A+ +FRD+ SY K
Subjt:  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHI--LDNTHMFVQPHVADMIRNAISEFRDQISYEK

Sequences

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CDS sequence

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ATGTTTATATTTGAGATTTCAACAAATTCTATTCTATGCATGAACCGCCAGCAGTCCGCAGGAGGGACTGAGTTTCAGTTAAATTTGTTCTGCTGCTGTTTGAGGGTGGG
CGTTTTTGACATCATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGTGACATACCTATGGCACAATTTATCATCAATTACAATGCTTCCTTGCCTGCATCCCATAGAT
TTATCATCCACATACTGGATAATACTCACATGTTTGTGCAACCCCATGTAGCTGACATGATTCGAAACGCCATCTCGGAATTTCGAGATCAGATTTCATATGAGAAACCT
ACTTGA

mRNA sequence

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Protein sequence

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MFIFEISTNSILCMNRQQSAGGTEFQLNLFCCCLRVGVFDIMVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKP
T

PI0020756 (gene) of Melon (PI 482460) v1 genome