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PI0020775 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020775
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr06:6242544..6243954
RNA-Seq ExpressionPI0020775
SyntenyPI0020775
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047613.1 uncharacterized protein E6C27_scaffold115G00860 [Cucumis melo var. makuwa]2.1e-2445.27Show/hide
Query:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLRHPSSFNLPHPEDLRTPDGGLLLPPS
        VD G+F  NQL RH+ S+ +KLPI LPRFF   LL  N T+L  ++A G  P  L LSYRLFQ SHVPDI+H +       L    D      G ++   
Subjt:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLRHPSSFNLPHPEDLRTPDGGLLLPPS

Query:  LANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEAP
        LA++IL+ L++ESRSLST+I  + ERR  IDS++  ++   PS  + P
Subjt:  LANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEAP

KAA0059174.1 F5J5.1 [Cucumis melo var. makuwa]3.6e-2445.21Show/hide
Query:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEH---SLRHPSSFNLPHPEDLRTPDGGLLL
        VD  +F  NQL RH+ S+ +KLPI LPRFF   LL  N  +L  ++A GP P  L LSYRLFQGSHVPDI+H   S R P  F++    D      G  +
Subjt:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEH---SLRHPSSFNLPHPEDLRTPDGGLLL

Query:  PPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPS
           LA++IL++L++ES SL+T+I  ++ER   IDS++  ++   PS
Subjt:  PPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPS

TYK19345.1 F5J5.1 [Cucumis melo var. makuwa]3.6e-2445.21Show/hide
Query:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEH---SLRHPSSFNLPHPEDLRTPDGGLLL
        VD  +F  NQL RH+ S+ +KLPI LPRFF   LL  N  +L  ++A GP P  L LSYRLFQGSHVPDI+H   S R P  F++    D      G  +
Subjt:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEH---SLRHPSSFNLPHPEDLRTPDGGLLL

Query:  PPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPS
           LA++IL++L++ES SL+T+I  ++ER   IDS++  ++   PS
Subjt:  PPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPS

TYK23117.1 uncharacterized protein E5676_scaffold142G001090 [Cucumis melo var. makuwa]2.1e-2442.77Show/hide
Query:  PTPDELATELTGGT--------GQPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLR
        P+ DELA   +GGT         + VD G F  NQL RH+    +K+PI LPRFF + L+  N   +  N+A GP+   L LSYRLFQGSHVP++EH +R
Subjt:  PTPDELATELTGGT--------GQPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLR

Query:  HPSSFNLPHPEDLRTPDGGLL-LPPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEA
         PS   L    D    DG     P  LA++I++ L+ ESR+LST ++ L++RR  ++S+V  ++ LIPS   A
Subjt:  HPSSFNLPHPEDLRTPDGGLL-LPPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEA

XP_008460128.1 PREDICTED: uncharacterized protein LOC103499027 [Cucumis melo]2.1e-2445.27Show/hide
Query:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLRHPSSFNLPHPEDLRTPDGGLLLPPS
        VD G+F  NQL RH+ S+ +KLPI LPRFF   LL  N T+L  ++A G  P  L LSYRLFQ SHVPDI+H +       L    D      G ++   
Subjt:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLRHPSSFNLPHPEDLRTPDGGLLLPPS

Query:  LANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEAP
        LA++IL+ L++ESRSLST+I  + ERR  IDS++  ++   PS  + P
Subjt:  LANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEAP

TrEMBL top hitse value%identityAlignment
A0A1S3CCA3 uncharacterized protein LOC1034990271.0e-2445.27Show/hide
Query:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLRHPSSFNLPHPEDLRTPDGGLLLPPS
        VD G+F  NQL RH+ S+ +KLPI LPRFF   LL  N T+L  ++A G  P  L LSYRLFQ SHVPDI+H +       L    D      G ++   
Subjt:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLRHPSSFNLPHPEDLRTPDGGLLLPPS

Query:  LANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEAP
        LA++IL+ L++ESRSLST+I  + ERR  IDS++  ++   PS  + P
Subjt:  LANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEAP

A0A5A7TVN6 Uncharacterized protein1.0e-2445.27Show/hide
Query:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLRHPSSFNLPHPEDLRTPDGGLLLPPS
        VD G+F  NQL RH+ S+ +KLPI LPRFF   LL  N T+L  ++A G  P  L LSYRLFQ SHVPDI+H +       L    D      G ++   
Subjt:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLRHPSSFNLPHPEDLRTPDGGLLLPPS

Query:  LANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEAP
        LA++IL+ L++ESRSLST+I  + ERR  IDS++  ++   PS  + P
Subjt:  LANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEAP

A0A5A7UVR7 F5J5.11.8e-2445.21Show/hide
Query:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEH---SLRHPSSFNLPHPEDLRTPDGGLLL
        VD  +F  NQL RH+ S+ +KLPI LPRFF   LL  N  +L  ++A GP P  L LSYRLFQGSHVPDI+H   S R P  F++    D      G  +
Subjt:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEH---SLRHPSSFNLPHPEDLRTPDGGLLL

Query:  PPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPS
           LA++IL++L++ES SL+T+I  ++ER   IDS++  ++   PS
Subjt:  PPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPS

A0A5D3D755 F5J5.11.8e-2445.21Show/hide
Query:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEH---SLRHPSSFNLPHPEDLRTPDGGLLL
        VD  +F  NQL RH+ S+ +KLPI LPRFF   LL  N  +L  ++A GP P  L LSYRLFQGSHVPDI+H   S R P  F++    D      G  +
Subjt:  VDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEH---SLRHPSSFNLPHPEDLRTPDGGLLL

Query:  PPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPS
           LA++IL++L++ES SL+T+I  ++ER   IDS++  ++   PS
Subjt:  PPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPS

A0A5D3DHI7 Uncharacterized protein1.0e-2442.77Show/hide
Query:  PTPDELATELTGGT--------GQPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLR
        P+ DELA   +GGT         + VD G F  NQL RH+    +K+PI LPRFF + L+  N   +  N+A GP+   L LSYRLFQGSHVP++EH +R
Subjt:  PTPDELATELTGGT--------GQPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLR

Query:  HPSSFNLPHPEDLRTPDGGLL-LPPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEA
         PS   L    D    DG     P  LA++I++ L+ ESR+LST ++ L++RR  ++S+V  ++ LIPS   A
Subjt:  HPSSFNLPHPEDLRTPDGGLL-LPPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAAGGTTTTCGGAAAACTCACCAGTGAAGAGGGCTCCACGAGTACCAAACTTAGCGAACGGAGGGCCTCACACCGTACTACCTTGCTATGCGAACCAACCCA
GGCCACACAAGCAAGCGGCAAGGGTTTCCGGCGGTACGGACAGGCGGAGAGGGAGCTCCGGGCGGCGAGACAACGCGCAACGCTAGGGCTTTTTGAGAGAGAGTGGGTTG
CTCGGGATGCTACACGCGAAGCAGAAAGGAGGAAAGTGCTGGAGAAGAATGGCAAAACACGAAAGGAGGGAGGTGTGGCCTTCACCATCTCATCTGCTTCTATCAATGCT
TTTCTTGATATTCTTCTTCCTTCTGATCCTCCAACTTCACCTACTCCTGACGAGCTTGCAACTGAGTTAACGGGGGGGACTGGTCAACCTGTTGATTTTGGTTCTTTTGC
TGTGAATCAACTCAAGCGTCACATTGATTCATATGCCATCAAACTCCCTATCTGTCTGCCTCGTTTTTTCTGTAATTTCCTTCTGACCCAGAACCGTACCATACTTCATC
CTAATGAGGCTCTTGGTCCGTCTCCCTCCAAACTTCAATTAAGCTATCGTCTGTTTCAAGGATCTCATGTACCTGATATTGAGCATTCTCTCCGCCATCCATCTTCTTTT
AATCTTCCCCACCCTGAAGATTTAAGAACACCTGATGGTGGCCTGCTACTTCCTCCTTCACTAGCTAACCAAATTTTGCATGCCTTATCCTCTGAATCAAGAAGTCTCAG
TACCATCATTCATGATCTTACTGAAAGACGAAGACTTATTGATTCCGTGGTCTCTTCAGTTCGGCTGCTGATCCCATCTTTAGAGGAAGCTCCTAATGTCAATCCTGATC
CTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAAGGTTTTCGGAAAACTCACCAGTGAAGAGGGCTCCACGAGTACCAAACTTAGCGAACGGAGGGCCTCACACCGTACTACCTTGCTATGCGAACCAACCCA
GGCCACACAAGCAAGCGGCAAGGGTTTCCGGCGGTACGGACAGGCGGAGAGGGAGCTCCGGGCGGCGAGACAACGCGCAACGCTAGGGCTTTTTGAGAGAGAGTGGGTTG
CTCGGGATGCTACACGCGAAGCAGAAAGGAGGAAAGTGCTGGAGAAGAATGGCAAAACACGAAAGGAGGGAGGTGTGGCCTTCACCATCTCATCTGCTTCTATCAATGCT
TTTCTTGATATTCTTCTTCCTTCTGATCCTCCAACTTCACCTACTCCTGACGAGCTTGCAACTGAGTTAACGGGGGGGACTGGTCAACCTGTTGATTTTGGTTCTTTTGC
TGTGAATCAACTCAAGCGTCACATTGATTCATATGCCATCAAACTCCCTATCTGTCTGCCTCGTTTTTTCTGTAATTTCCTTCTGACCCAGAACCGTACCATACTTCATC
CTAATGAGGCTCTTGGTCCGTCTCCCTCCAAACTTCAATTAAGCTATCGTCTGTTTCAAGGATCTCATGTACCTGATATTGAGCATTCTCTCCGCCATCCATCTTCTTTT
AATCTTCCCCACCCTGAAGATTTAAGAACACCTGATGGTGGCCTGCTACTTCCTCCTTCACTAGCTAACCAAATTTTGCATGCCTTATCCTCTGAATCAAGAAGTCTCAG
TACCATCATTCATGATCTTACTGAAAGACGAAGACTTATTGATTCCGTGGTCTCTTCAGTTCGGCTGCTGATCCCATCTTTAGAGGAAGCTCCTAATGTCAATCCTGATC
CTTAA
Protein sequenceShow/hide protein sequence
MEKKVFGKLTSEEGSTSTKLSERRASHRTTLLCEPTQATQASGKGFRRYGQAERELRAARQRATLGLFEREWVARDATREAERRKVLEKNGKTRKEGGVAFTISSASINA
FLDILLPSDPPTSPTPDELATELTGGTGQPVDFGSFAVNQLKRHIDSYAIKLPICLPRFFCNFLLTQNRTILHPNEALGPSPSKLQLSYRLFQGSHVPDIEHSLRHPSSF
NLPHPEDLRTPDGGLLLPPSLANQILHALSSESRSLSTIIHDLTERRRLIDSVVSSVRLLIPSLEEAPNVNPDP