CuGenDBv2

Gene ID	PI0020791
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Beta-galactosidase
Genome location	tig00003626:1101675..1103129
RNA-Seq Expression	PI0020791
Synteny	PI0020791
Gene Ontology terms	NA
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025363.1 Beta-galactosidase [Cucumis melo var. makuwa]

9.8e-48

47.48

Show/hide

Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++    T LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

KAA0031941.1 Beta-galactosidase [Cucumis melo var. makuwa]

9.8e-48

47.48

Show/hide

Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++    T LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]

9.8e-48

47.48

Show/hide

Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++    T LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

KAA0059998.1 putative polyprotein [Cucumis melo var. makuwa]

1.2e-48

47.9

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Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++   ST LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

KAA0067540.1 Beta-galactosidase [Cucumis melo var. makuwa]

4.4e-48

47.48

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Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++    T LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQW1 Beta-galactosidase

4.7e-48

47.48

Show/hide

Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++    T LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

A0A5A7TVI6 Beta-galactosidase

4.7e-48

47.48

Show/hide

Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++    T LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

A0A5A7UXP1 Putative polyprotein

5.6e-49

47.9

Show/hide

Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++   ST LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

A0A5A7VK49 Beta-galactosidase

2.1e-48

47.48

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Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++    T LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

A0A5A7VLQ7 Beta-galactosidase

4.7e-48

47.48

Show/hide

Query:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------
        PQIGKPL YAATA+D+WD  + LYSKRQNASRLYT  KQVH CKQGT+D+T YF++LSL+WQEMDLCRE VW+ P     Y+K+EE              
Subjt:  PQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEG-------------

Query:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN
                   RP+PSLME                ++  P++                     +PVCEHC+K WHTKD  WKL GRPP GKK   NEK N
Subjt:  -----------RPIPSLME---------------PLVRNPSV-------------LQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHN

Query:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG
        SGRA++SE+  A TSQ   P  ++    T LGAIA+SG
Subjt:  SGRAFMSES--AGTSQPPTPAGNRGDPSTPLGAIAESG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

7.1e-04

26.58

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Query:  TPQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGG
        T ++ + + YA TA  +W+ +++++    +  ++Y   +++   +QG   + EYF +LS +W E+     I   C CGG
Subjt:  TPQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCCGGGCCTCAGAAATTTGGTATGGAACCCCTCAAATTGGGAAACCTTTGTTCTATGCTGCTACTGCTCGGGACATATGGGATAGAGTGAAGAAGTTATACTCAAA
GAGGCAGAATGCGTCTCGCCTTTATACTAAGGGCAAGCAGGTTCATGAGTGCAAGCAGGGGACAATGGATCTCACTGAATATTTTCACAGGCTGTCCCTGATTTGGCAAG
AGATGGACCTGTGTCGAGAGATTGTCTGGAACTGCCCTTGTGGAGGTCTTTTGTACTCCAAAATTGAGGAAGGGAGGCCTATTCCTTCATTGATGGAGCCTTTAGTGCGA
AATCCTTCAGTTCTTCAAGTGAAAAGGAAAATGGGAGTCCCGGTGTGTGAACATTGTCAGAAACCTTGGCATACGAAAGACAGTTCTTGGAAGTTAGATGGTCGACCACC
AAATGGTAAGAAAGGTAGGCCAAATGAGAAGCATAATTCTGGTAGGGCTTTTATGAGTGAATCAGCTGGAACTTCACAACCCCCAACCCCTGCAGGGAATCGAGGTGATC
CTAGTACTCCTCTTGGAGCCATTGCAGAATCAGGCTCATCAACTCAATATTTCTTTTCACCTCTCCTGCGAAAGAAAGAGAAATAA

mRNA sequence

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Protein sequence

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MARASEIWYGTPQIGKPLFYAATARDIWDRVKKLYSKRQNASRLYTKGKQVHECKQGTMDLTEYFHRLSLIWQEMDLCREIVWNCPCGGLLYSKIEEGRPIPSLMEPLVR
NPSVLQVKRKMGVPVCEHCQKPWHTKDSSWKLDGRPPNGKKGRPNEKHNSGRAFMSESAGTSQPPTPAGNRGDPSTPLGAIAESGSSTQYFFSPLLRKKEK

PI0020791 (gene) of Melon (PI 482460) v1 genome